2NBQ,4ROW


Conserved Protein Domain Family
NAD2

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pfam18782: NAD2 (This model is not part of the current CDD release)
Novel AID APOBEC clade 2
A distnct family of AID/APOBEC deaminases found only in Amphibians.
Statistics
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PSSM-Id: 523444
Aligned: 13 rows
Threshold Bit Score: 215.319
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2NBQ_A         6 YLMDPDTFTFNFNN---DPL-VLRRRQTYLCYEV-ERLd--nGTWv-LmdqHMGFLCNE----AknllcgfygR---HAE 70  human
XP_013008555  31 DCLYQSTFYFHFEN---LPN-ADGRHKTFLCFEV-KNR----NEV--L---HKGFFLNQpspfR---------L---HAE 84 
XP_012966578  33 KMLYERTFYFHFKN---LHY-ANGRKNTFLCFEV-NRMe--cGELvp---lCQGVFRKEss-----------nL---HAE 88 
2_pfamImport   1 KAMYPHTFYFHFEN---LQK-AYGRNETWLCFAV-EIIk--qHSTvs---wKTGVFRNQ----Vdpe----thC---HAE 59 
NP_001153887 234 DPLSEEEFYSQFYNqrvKHLcYYHRMKPYLCYQL-EQFn--gQAP------LKGCLLSEkg-----------kQ---HAE 290
Q694C1       195 HSMDPPTFTSNFNN---EHW-VRGRHETYLCYEV-ERLh--nDTWv-LlnqRRGFLCNQaphkHgfl----egR---HAE 259 western lowland...
1_pfamImport   1 HLMDPNTFTFNFNN---DLS-VRGRHQTYLCYEV-ERLd--nGTWv-PmdeRRGFLCNK----AknvpcgdygC---HAE 65 
XP_011887342  21 KRMKTGIFVSNFNN---KPI-LSGRNTVWLCCEV-KTKdpsgPPL--DakiFRGKVYSKa------------kY---HPE 78 
4_pfamImport   1 ERMYQRTFYYHFEN---KPI-LYGRSYTWLCYEV-KIRk--dPSKlp---wDTGVFRGQ----Vysk----peH---HAE 59 
KAI4003060   191 YLMDPDTFTFNFNN---DPL-VLRRRQTYLCYEV-ERLd--nGTWv-LmdqHMGFLCNEa---Knll----cgFygrHAE 255
4ROW_A         9 HSMDPPTFTFNFNN---EPW-VRGRHETYLCYEV-ERMh--nDTWv-LlnqRRGFLCNQ----AphkhgflegR---HAE 73  human
NP_001257340  10 ERMYRDTFYDNFEN---EPI-LYGRSYTWLCYEVkIKRgrsnLLWdtGvfrGQVYFKPQ--------------Y---HAE 68  human
XP_047297141  10 ERMYRDTFSYNFYN---RPI-LSRRNTVWLCYEV-KTKg--pSRPr----lDAKIFRGQ----Vysq----peH---HAE 67  human
2NBQ_A        71 LRFLDLV---PslqLDPAQIYRVTWFISWSPCFSwgCAGEVRAFLQENTHVRLRIFAARIY-DY-DPL--YKEALQMLRD 143 human
XP_013008555  85 LSFLSWFhdtE---LSFDENYKVTWYMSWSPCPE--CAKEIVTFLDNHHNVTLTIYVARLYyHW-NPT--YKEGLRALVQ 156
XP_012966578  89 VCFLYWFhtqVlgmLPPGEKYKITWYMSWSPCSE--CAAEVTRFLDTHRNLSLAIFSSRLYyFW-KSD--YQDKLRRLNQ 163
2_pfamImport  60 RCFLSWF---CdntLSPKKNYQVTWYISWSPCPE--CAGEVAEFLATHSNVKLTIYTARLYyFW-DTD--YQEGLRSLSE 131
NP_001153887 291 ILFLDKIr-----sMELSQ-VTITCYLTWSPCPN--CAWQLAAFKRDRPDLILHIYTSRLYfHWkRP---FQKGLCSLWQ 359
Q694C1       260 LCFLDVIpf---wkLDLHQDYRVTCFTSWSPCFS--CAQEMAKFISNKKHVSLCIFAARIY----DDQgrCQEGLRTLAE 330 western lowland...
1_pfamImport  66 LCFLGEV---PswqLDPAQTYRVTWFISWSPCFRrgCAGQVRAFLQENTHVRLRIFAARIY-DY-DFL--YQEALRTLRD 138
XP_011887342  79 MRFLRWFl--KwrqLHRDQEYEVTWYVSWSPCTG--CANSVATFLAKDPKVTLTIFVARLYyFW-KPD--YQEALRVLCQ 151
4_pfamImport  60 MCFLSRF---CgnqLPAYKRFQITWFVSWNPCPD--CVAKVIEFLAEHPNVTLTISTARLYyYW-GRD--WQRALCRLRQ 131
KAI4003060   256 LRFLDLV---PslqLDPAQIYRVTWFISWSPCFSwgCAGEVRAFLQENTHVRLRIFAARIY-DY-DPL--YKEALQMLRD 328
4ROW_A        74 LCFLDVI---PfwkLDLDQDYRVTCFTSWSPCFS--CAQEMAKFISKNKHVSLCIFTARIYdDQ-GR---CQEGLRTLAE 144 human
NP_001257340  69 MCFLSWF---CgnqLPAYKCFQITWFVSWTPCPD--CVAKLAEFLSEHPNVTLTISAARLYyYW-ERD--YRRALCRLSQ 140 human
XP_047297141  68 MCFLSWF---CgnqLPAYKCFQITWFVSWTPCPD--CVAKLAEFLAEHPNVTLTISAARLYyYW-ERD--YRRALCRLSQ 139 human
2NBQ_A       144 AG----AQVSIMTYDEFEYCWDTFVYRqgCPFQPWDGLEEHSQALSGRLRAIL 192 human
XP_013008555 157 GG----TRLYTMAFPEFEDCWSLFVCN--ETFRPWENFHKCCSLQDKTLQKIL 203
XP_012966578 164 AG----AQIAAMDFPEFEKCWNKFVDNdgKSFRPWKRLKINFRNQDSTLWDIL 212
2_pfamImport 132 EG----ASVEIMGYEDFKYCWENFVCDdgEPFKPWKGINTNFRFLERRLWKIL 180
NP_001153887 360 SG----ILVDVMDLPQFTDCWTNFVNPk-RPFWPWKGLEIISRRTQRRLRRIK 407
Q694C1       331 AG----AKISIMTYSEFKHCWDTFVYHqgCPFQPWDGLEEHSQALSGRLQAIL 379 western lowland gorilla
1_pfamImport 139 AG----AQVSIMTYEEFKHCWDTFVDRqgRPFQPWDGLDEHSQALSGRLRDIL 187
XP_011887342 152 KRgsphATMKIMNYNEFQHCWNKFVRGrrEPFEPWENLPKHYTLLHATLGELL 204
4_pfamImport 132 AG----ARVKIMDYEEFAYCWENFVYNedQSFMPWYKFNDNYAFLHRMLKEIL 180
KAI4003060   329 AG----AQVSIMTYDEFEYCWDTFVYRqgCPFQPWDGLEEHSQALSGRLRAIL 377
4ROW_A       145 AG----AKISIMTYSEFKHCWDTFVDHqgCPFQPWDGLDEHSQALSGRLRAIL 193 human
NP_001257340 141 AG----ARVTIMDYEEFAYCWENFVYNegqQFMPWYKFDENYAFLHRTLKEIL 189 human
XP_047297141 140 AG----ARVKIMDDEEFAYCWENFVYSegQPFMPWYKFDDNYAFLHRTLKEIL 188 human
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