Conserved Protein Domain Family
ddrB-ParB

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pfam18763: ddrB-ParB (This model is not part of the current CDD release)
ddrB-like ParB superfamily domain
A member of the ParB/sulfiredoxin superfamily of proteins found in polyvalent proteins prototyped by the version in the phage P1 ddRB protein. These proteins are predicted to function as nucleases.
Statistics
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PSSM-Id: 523435
Aligned: 28 rows
Threshold Bit Score: 93.1329
Created: 20-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_091451303  844 ESGVKLDGVYALMSADDLITSHIegswpnplypQELQPRDRSRRASELQVSGIVQKLDPARLGASADA-ATGAPIV---- 918  Giesbergeria ...
WP_091647331 1160 TLDKGFNATYKLVPSGDLITSNLtdysinpkypIELQPRDRQRGEMRNQVEKMARTIKPELLSDSQFV-NQGAPVV---- 1234 Megasphaera p...
WP_038698530  938 ADGVDVDFDYVLVDANQLQPAHSngvrnhnhfvPEAQPKNRKDAASLKSSDEMAAKINVRELGDNTNA-YSGAPVI---- 1012 Sphingobacter...
WP_095230178  709 VNGKDYKATFKLIEKDDLKPNFT-----------NSKTQYR-LEDNKVAKANLANFNANTHLNISNQTlEDGVPLL---- 772  Helicobacter ...
WP_015453780    4 DETAPFEAEFAVVKLSDIKPNFD-----------NSNTQGR-LIKQESAIANIVNDFKPELIFYQEGG-VNGVPII---- 66   Helicobacter ...
5_pfamImport    1 NDDEIHPLKFVIVNKSDLKPNFK-----------NTGTQTR-TAVDSKKVEEIAERFDPKLIIGRGG--FDDLPII---- 62  
WP_013890972  291 DDARIYPLDFVIVKTSDVKPNLN----------AGVGTQTR-TQTNPQRIEEIAKDFKPTMVFNRGG--FDDLPII---- 353  Helicobacter ...
WP_281747254  231 DDTHIYPLDFVVVKTTDVKPNMQ----------AKSGVQTR-TQTDLNKVAEIANNFKPEYVINRGG--FDDLPII---- 293  Helicobacter ...
WP_066456848  579 NENEIYPLDFVIVKKQDLKPNFN-----------ASELQGR-TEANTHTIQDIANNFNPQKILGRGG--FQDLPII---- 640  Helicobacter ...
1_pfamImport    1 PNTGTQP-------APEPTGQDV-----------NLQNRDRSRAASVIQMSEIARNPDYMRLGPSRTP-DSGAPMVfavg 61  
WP_091451303  919 -----------------------------------------------------GADG-LVESGNARMIALKRV---YHQa 941  Giesbergeria ...
WP_091647331 1235 -----------------------------------------------------NKNG-IVLNGNGRTIAIQRA---YE-- 1255 Megasphaera p...
WP_038698530 1013 -----------------------------------------------------NERG-EVIQGNNRSDAIRKH---YES- 1034 Sphingobacter...
WP_095230178  773 -----------------------------------------------------DKLG-NIISGNHRSQKLLGL---TPL- 794  Helicobacter ...
WP_015453780   67 -----------------------------------------------------TRDG-KVVSRNHRSEALRQIfnaQTHn 92   Helicobacter ...
5_pfamImport   63 -----------------------------------------------------LKDG-QVIAGNHRTQGMLNF---NAG- 84  
WP_013890972  354 -----------------------------------------------------LADG-QVIAGNHRAKGMQSF---SPQ- 375  Helicobacter ...
WP_281747254  294 -----------------------------------------------------INDG-QVIVGNHRALGMQEF---SPE- 315  Helicobacter ...
WP_066456848  641 -----------------------------------------------------RKDG-AIISGNHRTQGMLEF---SQE- 662  Helicobacter ...
1_pfamImport   62 ddlsripatsfgngdvavmsdgqrvpfryavvdasqvepsnfadgrvnpafaaGQTGtIKALNNGRTAGLRAA---YEL- 137 
WP_091451303  942 NgqK-----AENYKAFLRDKAAQFGIDpatVDVTPKPVLVRVRS 980  Giesbergeria anulus
WP_091647331 1256 GqdRqhkisAAGYKQYLKDNANKFGFTsgqVQAIDNPILVRQVD 1299 Megasphaera paucivorans
WP_038698530 1035 ---G-----RDKYKSALESNAEQFGLTkeqVQGLDKPVLVRRVK 1070 Sphingobacterium sp. ML3W
WP_095230178  795 ---E-----KKSYEEALAKFL---GDKkdlLKNYSNPILIRVLD 827  Helicobacter sp. 13S00401-1
WP_015453780   93 AetA-----QQKYKQGAKEFLG--------VALENDEIIVRRLK 123  Helicobacter cinaedi
5_pfamImport   85 ---S-----RKKYEQAIKENFN--------IELKPDELLVRMPK 112 
WP_013890972  376 ---S-----REAYERAVLEHYN--------ITLKSDELLLRTPK 403  Helicobacter bizzozeronii
WP_281747254  316 ---S-----RKAYEQAISNTYG--------IELKHDELLVRTPK 343  Helicobacter suis
WP_066456848  663 ---S-----RAAYENAIKEQYG--------ITLKDDELLMRTPK 690  Helicobacter sp. CLO-3
1_pfamImport  138 G--S-----AGTYQTELAKDLANVGISpgaLQATPNPILVRVYS 174 
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