5DGK


Conserved Protein Domain Family
HTH_56

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pfam18662: HTH_56 (This model is not part of the current CDD release)
Cch helix turn helix domain
Staphylococcal Cassette Chromosome, or SCC elements, are a family of genomic islands found in S. aureus and closely related species. SCC elements that carry the mecA gene are called SCCmec and render S. aureus methicillin-resistant, creating the MRSA strains. Cch, the self-loading helicase encoded by SCCmec type IV, belongs to the pre-sensor II insert clade of AAA+ ATPases, as do the archaeal and eukaryotic MCM-family replicative helicases. The N-terminal domain carries pfam06048. The central domain (residues 157-438) contains an AAA+ ATPase fold. This domain is found at the C-terminal region, it is a winged helix-turn-helix (WH) domain typical of many dsDNA-binding proteins.
Statistics
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PSSM-Id: 523398
Aligned: 29 rows
Threshold Bit Score: 76.967
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5DGK_A        439 SLADKAIDVIIQFVAQNRGKFSDEGAL-K-NXFenYGLISLKDDHIE----VKIIANVFKQXLNNHQFqDVNNVVNALRD 512 Staphylococcus...
EGN35106      495 DVAERSYQAVLNWIAKNPVRFQNPNGTdSlNKGevWGRIDEDEEHPEkppvAVINKDVLCEFLEKTGF-DYAAISKKWAE 573
CCY42994      506 DVAERAYQQVLNWAAKNPVRFEDPKADnSpNKGevWGKIDEDK--------LIVNRDVLLAFLDQNGF-DYTAVSKKWSE 576
KKO20920      735 DVGTRAMEYILSWANANEASFKGNTTKsFg----kWKEFEY----------LGIYKSELANALREENF-SERVVLRLWSE 799
WP_054261234  734 DYAQKALDFTLGWIASNSEYFKDNGSTtq-----qYGFFKPSGE-------CCIVPEVFKDALRKAGL-SVSLVLKEFAE 800 Propionispora ...
CDC21044      737 DVNENAKQFVVDWILSNKDNFGLNARSn------cLGFINDDK--------AYILPTLLKKALKDNGF-SARKSMNYFAE 801
CDB95082      734 DVNENALQYIIDWILSNKEQFTEYAKGaK------YGFEKMGK--------YYIIPSVLSEALKRVGY-TKTKTLRFLYE 798
jgi:Clos_1294 781 DIVEKAYEFVKGWMISNIDQFKESSKGqR------FGIIDGDS--------FYVFPQILQEALEKQGL-SYRKIIRGFAD 845
WP_084478112  783 DNIERAWEAFVNWIIANNQRFQFDTPSpR------YGRIDLNEN-------YFVIPTYAHKALEEAGF-SPKKVFRGFAE 848 Fervidicella m...
WP_010076552  782 DNIERAWEMFTGWLIANNEKFQFDAKApR------YGRIDINDN-------YYVIPSFAHKALEDAGF-SPKKVFRGFAE 847 Clostridium ce...
5DGK_A        513 KGFILADR-GRQTTKRSV-KDNSGkkqSlVFYHLKLDVE 549 Staphylococcus aureus
EGN35106      574 KNRLV----KNTQGKFVH-QTKVHgikA-SYLKINMEPD 606
CCY42994      577 KGYLV----RNSQGKFIH-STKVYgikS-SYIKFRLPQD 609
KKO20920      800 KEWIKRED-------------------D-KFTCVRDGKR 818
WP_054261234  801 RGWIETETaGSGKATYSV-RCYWKn--S-RVRMIVFTSC 835 Propionispora sp. 2/2-37
CDC21044      802 KGIITSKK-YDTQKTYSI-TKRFNgrsC-RFVEFHLNCN 837
CDB95082      799 KGIISK---DGDNGSYTV-REYMDtkrS-RFIEFDFEKA 832
jgi:Clos_1294 846 RGYIGISY-ESDGKKRNSvVKKIEgraC-RMISFDLSEA 882
WP_084478112  849 RGYIESYI-DTEGIRRFQiSKSICgktC-RVYVVKVPIG 885 Fervidicella metallireducens
WP_010076552  848 RGYIESQV-DKDGVLRLQiTKSIGgknC-RVYVVRIPDD 884 Clostridium cellulovorans
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