Conserved Protein Domain Family
Phage_int_SAM_6

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pfam18644: Phage_int_SAM_6 
Phage integrase SAM-like domain
Xer recombinases are members of the tyrosine site-specific recombinase superfamily, a large group of enzymes that catalyze DNA breakage and rejoining using a conserved tyrosine nucleophile. Tyrosine recombinases promote various programmed DNA rearrangements including the monomerization of phage, plasmid and chromosome multimers, resolution of hairpin telomeres, and the movement of virulence and antibiotic resistance carrying integrative mobile genetic elements. Structural analysis of Helicobacter pylori XerH indicates that this N-terminal domain consisting of six alpha-helices contacts the DNA using a four-helix bundle.
Statistics
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PSSM-Id: 436644
Aligned: 15 rows
Threshold Bit Score: 197.106
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_034558614   6 NNEKGFDVSIRFWLERFFYAKFMNLTAYRVKDKKAFAEVIQEIQSGgRNSIDDIRKICKKARRIGLLGINTYANPLLFFY 85  Helicobacter mu...
1_pfamImport   1 LNKDNFEMSLKFWLERFFYSKFMNLSSHRVKDKGEFAKIIQEIQSGgRQDIQNIELICKKARKVGLLGINTYASPLFSFY 80 
WP_023928073   7 PF-ESVERNYLFWLQKFFIHKMTTLSNRHIHDKEAFTKSLDSIKSA--QNLGEFERAIKSARNCGMIGLNTYANPLFKLG 83  Helicobacter ma...
WP_012857040   6 DEKESFEQSLLFWLNRFIKSKLTSLSNRHVVENAKLSKIIGTLNQG-CTSMQALKDLSKEARNIGLIGINLFINPLEKFY 84  Sulfurospirillu...
WP_012108987   6 DFKDNFSESFLFWIRKFVKFKFSSLSNKEVKNPQTFAQINLLLEND--MNPDELKKITKNARNIGLTGINTYIQPLLKFY 83  Campylobacter h...
WP_016646991   6 DYKDSVENSLIFWLCKFVRYKLSSLSNKELKDPKALNSVNLRLIKG-VENFKELDGLVKEARNAGIAGVNTYFNPLKKVA 84  Campylobacter u...
WP_009651130   6 DCKGSFEKSMLFWLIRYVKFKLSSLSNKELREPATLASVNYALNRE-IKTINELDGLVKTARNAGLTGINTYFNPLKKIY 84  Campylobacter
Q0PA27         6 DCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEVNFALTKG-VKNIDELDALAKKARNAGLSGVNTYFNPLKKVF 84  Campylobacter j...
2_pfamImport   1 DFKNNFNDTLLFWLERFIRNKLTTLSNRQVLQKEKLASIIQQLVKG-TKYIDELAFIAKEARNIGLAGVNTYFNPLFKLY 79 
WP_013135539   6 DCELSFNKTFLFWLSRFVRNKITSLSNRQVTNKDRLAEIIQELING-FNDINDLKNLIKEVRNIGMNGISVYYLPLEKLY 84  Arcobacter nitr...
WP_034558614  86 DYCIRA-GFSDMREIEVNNVQEFLSIYTANLSNATLRNYQFALTNFFEFIQKNN 138 Helicobacter muridarum
1_pfamImport  81 EYAIKA-GFYDMREISIDNVQEFLSIYGGNLSLASMRNYRIALNNFFGFIEKNN 133
WP_023928073  84 EYLASAdSISSLREIDEVFLSEFITIATARLSNATKRNFRIVLIGFFGFVDKHN 137 Helicobacter macacae
WP_012857040  85 TYVVPL-QLHSLKEIDEELLSEFLASQTGSLSDATKKNYRIALLSFFKFLDKQN 137 Sulfurospirillum deleyianum
WP_012108987  84 NAVVKY-NLKSISQIDEELVSEILAVITGGLSDATKKNYRVVMINFFGFLDSQN 136 Campylobacter hominis
WP_016646991  85 KAIIYY-EINSLKEINEEFLSEILASVTGGLSDATKKNYRIAVINFFTYLDKQN 137 Campylobacter ureolyticus
WP_009651130  85 EALCFY-ELDSLKRIDEELLSEVLASVTGGLSDASKKNYRISVINFFSFLDKQN 137 Campylobacter
Q0PA27        85 EYLNFY-KLYSLKQIDEELIVEVLASITGALSDASKKNYRIAVINFFDFLDKQN 137 Campylobacter jejuni subsp. jejuni NCTC 1...
2_pfamImport  80 NFLINS-GLASMKEIDEELLSDFLASETSSLSDASKKNHRIALLSFFSYIDKQN 132
WP_013135539  85 FYLIKF-GASSMREIDEEILSDFLASQTANLSDASKKNHRIALISFFGYIDKQN 137 Arcobacter nitrofigilis
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