Conserved Protein Domain Family
P2_N

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pfam18628: P2_N 
Viral coat protein P2 N-terminal domain
P2 (30.2 kDa) is the major outer-coat protein of the marine lipid-containing bacteriophage PM2. Each sub-unit of P2 is composed of two beta barrel jelly rolls, disposed normal to the surface of the capsid, which lend pseudo-6-fold symmetry to the molecules, facilitating their close packing within the capsid. There is a Ca2+ ion located between the two beta barrels of P2 that helps PM2 molecular organizations stabilization. This entry represents the N-terminal jelly roll domain of P2.
Statistics
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PSSM-Id: 497401
Aligned: 13 rows
Threshold Bit Score: 141.698
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013051464   4 YQKLPSISTVVKGETAVLTCP-IGATYDQIVIKHTGVT--AAQIKNIRVKANSKLLIEfKSGADLNKFNARYG-FSLTAG 79  Shewanella viol...
Q1H2P8         5 HIKLPSISRVVAGSTAVLEIP-IKPTYHNILFSVTGTGldVTDIGKIRVLANGKEVQTfASLQRLFDLNAYYGrSPDTVN 83  Methylobacillus...
WP_015817232   5 DVRMPSAASVQAGSTALFKLP-IGRRYHDLTLEYSGVT--LAQMTEIRILVNGKPFQR-FSATWRDAKNQFDR-LAAANG 79  Teredinibacter ...
WP_007017761   5 NLKLNSFSGVGAGQTASLVVA-NGPFYQDIYLKFSGS---IAELEAVTVKLNTVELFT-LSGTQIRMIDSYYG-NTTTAG 78  Bermanella mari...
WP_009600635   4 PTKLNSFTGADYGEKATLTIP-IGPTYEELFLETNLS---AAQLKRVTISLNADEIIV-LDGELIKKLEAYKG-LASTEG 77  Vibrio caribbea...
WP_010365131   8 RTQLPSPTGTDYNEEWNIKLQ-AGVTYHSIELETNLKN--VKTIKKITIDIGGVPVVT-RTNEILDLMDSFYK-RYKQTG 82  Pseudoalteromon...
WP_008737788   5 PREVKSFDGVGWGQKPQVKLA-GGPTYHEIVFETNLL---PEQIVMATLWLNGDPIVQ-MTGQQMVMLERYKK-HWEEPG 78  Isoalcanivorax ...
WP_044623331  12 PKELDPVEGVGWGNRASLRLV-SGPTYHSIELVTDITD--PNDIERVEVSLNGSAKIN-VTGETLVKLQAHRK-NYAQPG 86  Photobacterium ...
Q87PD9        15 PRELDPVEGVNWGNQATLRLV-SGPTYQNIELVTDILD--PADIERIAVKVNGREIVN-VTGQDLIDLQEHKK-EYVQAG 89  Vibrio parahaem...
WP_046075852   7 PKELDPVEGVYWGRQAHLRLV-TGPTYQQIELVTNITD--PADIDYVRLTLNGSPVVD-VTGQDLVDIQEHRG-NYVEDG 81  Salinivibrio sp...
WP_011829437   3 PIRLPQLQNVGPNQRVSLSLP-LGVTYQKLYFQLGTNIl-TSLITNIVLKLNNKEFARwKTAADLIAHNAYKGnYTGSTA 80  Methylibium pet...
WP_057293234   3 ILKNLPFFNVVATGVASLSLP-LGMTYERIILELGGTAftKAMITDLKAKLNGKVIWQ-TTGAKLDLLNKFRG-LATDAS 79  Noviherbaspiril...
Q0K1L5         4 LQQLPPFLNVVNSGVATLQIPrYSNTLTRIVLALGGTAltKAMITDIKVKIGARTVYN-VKGSALDLINKYKG-IYDDAN 81  Cupriavidus nec...
WP_013051464  80 FLDFHFKRDEMKTLMEQRAFSLGTSNqfkgsdiISSITVEFDIDA--AATAp--V---MKAFAYQS 138 Shewanella violacea
Q1H2P8        84 QFMIHFTDNAYDQLAYKRAPAFGTDD-------LQTFTVELELAAgaPADI---T---MKAQAFID 136 Methylobacillus flagellatus KT
WP_015817232  80 LLKIPFDRLGLKRRDQIEQTAVNTDSydqngrgIRSFSVEIDIAP--EAAAp--V---MEMSARQS 138 Teredinibacter turnerae
WP_007017761  79 YYRLPLSCAHVKDLERRVQTGLPTFN-------GDNLVIEVKIAA--GATAp--T---LEAFAEVR 130 Bermanella marisrubri
WP_009600635  78 FFTIPLSDITAKTKNGVRYTGLVTES-------GDNITLEVEIAPasQENAp--Kv-qLQAWASVS 133 Vibrio caribbeanicus
WP_010365131  83 RFVVDLSKFDYRTPAGIYQTQLVTVL-------NDDVTLKIEFGSrgTNDPerpT---LKAKAYVT 138 Pseudoalteromonas citrea
WP_008737788  79 RFVMPLADISGASLEGQSLSALPTFP-------ADNLILQVQVAQepAPNTq--GsvaLKADAWVS 135 Isoalcanivorax pacificus
WP_044623331  87 RYVISFGDATLRTKIGVRQTDLVTLA-------GEIWFVYITLKSkpAGTTa-pS---VRARAHVL 141 Photobacterium gaetbulicola
Q87PD9        90 RYVLNFSDMTMRTKLGIRTGELVTLQ-------GEIWFMYIQLKAktGTAAp--M---IRARAHTT 143 Vibrio parahaemolyticus
WP_046075852  82 RYIIPFADLGMKTKQGIRHGELVTLP-------GELWMMYIQLKNkdGDAAp-pS---IEARAHTT 136 Salinivibrio sp. KP-1
WP_011829437  81 FLVIDFTERLAREEAALTLGTVAATQea----gVQQFTLEFDLGNytAVAA---Si--ITGWADVE 137 Methylibium petroleiphilum
WP_057293234  80 HLVMDFTEIFARDEVGQSLGAIGTADg------VGSFTLEVTITG---ATAp--T---LESWSVLS 131 Noviherbaspirillum sp. Root189
Q0K1L5        82 FLTIDFTERDAPSIDGKEVGGFDLTAw------PDNMNLEITIAG---ATAp--T---LTGYMFLT 133 Cupriavidus necator H16
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