5D16


Conserved Protein Domain Family
TnsE_C

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pfam18623: TnsE_C (This model is not part of the current CDD release)
TnsE C-terminal domain
The bacterial transposon Tn7 facilitates horizontal transfer by directing transposition into actively replicating DNA with the element-encoded protein TnsE. Structural analysis of the C-terminal domain of TnsE identified a central V-shaped loop that toggles between two distinct conformations. It is suggested that a conformational change within the C-terminal domain of TnsE underlies target site selection by regulating stable engagement of the target DNA while providing a signal for activating transposition.
Statistics
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PSSM-Id: 523377
Aligned: 12 rows
Threshold Bit Score: 159.052
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5D16_A        47 NRFAAFDELLSILKTKFACRVLFEETLVLPKVGRSRLHLC--KDGSPRVIKAVGVQ-RNGSEFVLLEVDVSDGVKMLSTK 123 Escherichia coli
WP_013821045 380 NKFNIFLEMVDVLESVHGCKVVNKETVKLPKVGESKKHWLa-DSQNPRCMAIVELI-YDSQLITLLEIDTSDGSNKLSTM 457 Methylomonas me...
WP_062328595 387 SRFESFNRMLSVLRAKHSCKILSEETHDLPKVGRSQQHLL--KCGSARNIKEVRLS-LENKEFVLLELDTSDGSKMLSTK 463 Methylomonas
WP_208933069 383 SRFKSFDHMLQVLVTKYKCSILQQETQSLPKVGRSKQHQL--EDGSPRAIKAVRIR-YKATEAVLLEVDTSDGIKMLSTK 459 Rheinheimera sp...
EKE79262     361 SKFESFSKMLDLLATNHQCKVEIMAFRKLPSVGRCKMHLMwdDDSTPRCWMLVRVT-VSGNQFYLMEVDTSDAAKSLSTR 439
WP_024268913 379 TSFTQFNMMINKLCQRADVQHISSGAHPLPALSRYSKYCL--DDGSDRLILSHHIK-LLGNSIILLEVDTFDCPGKLSTL 455 Salinispira pac...
WP_014003724 379 HKFEAFEEMVVKLVNLAKCDHIRRQIRKLPWIEGYSKHLL--PDGSPRCLAFHLIS-KDGAVYALLEVETSDNKNRLSTL 455 Acidithiobacill...
2_pfamImport   1 KRFEAFKLLIKRLAERPNIHCTEK-LYFLSAVGRSRLHRT--IDGNNRSVLEVRVE-TGAAQFIILEIDTRDNYKSVSTL 76 
WP_012446736 365 NDFDEINQVLDLINERGNVVSVQRLVGKLKDHWSYGSFCDlkDGKKERRYLLGKITlSNGTEAVLIEIERED--RALTTL 442 Natranaerobius ...
WP_014873124 390 NRFSLLREIIEQISQESEIVLLTLEVGPLPLVARCSYSMI--DNEKPRCYLLAKFKqPDGSHRYLLEIDTSDKRTTMSTR 467 Marinobacter sp...
WP_021702547 394 DRFSLLREILEQITQESGVALVSLEVRPLPPVPRCSYHMI--DHEKSRCYLLARFKlQNGDQRYLLEIDTSDNRKTMSTR 471 Pseudomonadaceae
WP_012728536 384 SRFQSFNDMLKILEHKHGCTKLDTKMIELPKVGRSRKHLL--ANGLQRVIQYVKIK-TTNVTVRLLEIDTSDGEKMISTK 460 Tolumonas auensis
5D16_A       124 VLSGVD-SET---WRNDFEKIRRGVVK--SSLNWPNSLFDQLYGQDGHRGVNHP--KGLGELQVSRENMEGWAERV 191 Escherichia coli
WP_013821045 458 MLKTGA-SGW---VAENLESIKVGVIR--KSLGWPSDFFKHELTESGFSGIPHP--KSKHSGKLDPNEIGPWAQRF 525 Methylomonas methanica
WP_062328595 464 ILFGVE-LSN---WSEQFKEIITCVVSppTPLSWPNEKLNSLYGEEGHKGVHHPn-KGTEAGDIPLDSLDSWAKRF 534 Methylomonas
WP_208933069 460 VLFGSE-LQD---WIDHFLQIRKGVVA--KSISWPNELLDSLFGERNHVGINHPkhQGAEAGNIPLESIESWALRF 529 Rheinheimera sp. F8
EKE79262     440 VVMASS-AKA---VIERLSEIEIKLLK--KSLSWPKDYFDSEFGMKGHFFIVHQ--ASDKAGVIRQENIERWASNV 507
WP_024268913 456 LLKRNN-STLdslWEKEQFRIECELVK--QSLNWPTDYLNNI-SPNMYIRVKHP--RLNMPSLQQALWLKQWPERI 525 Salinispira pacifica
WP_014003724 456 FLKEQAsSFD---WERQIGVLEIQLLK--SSLVWPTSFLTKEFGS-NYKRIPHPktSSSNKALIEQESINHWAERV 525 Acidithiobacillus c...
2_pfamImport  77 ILKIDD-INV---WNENIDEILKAIVQ--KSLGWPKVSCLEKFG--TVHTLNHP--QGILELTEASEDFINWQRRL 142
WP_012446736 443 MLVSEK-TAN---WNKICHVVLKGLVK--NSGSWSAEVINKIKTTYGIREHRFKh---------TRTDIHKKEKRI 503 Natranaerobius ther...
WP_014873124 468 IMGFKA-RSV---AKGSLDQILKEAVK--GSLRWPTSMSTDCD---PMRSVNHP---KDSPSGITSAQIFDWKVRI 531 Marinobacter sp. BS...
WP_021702547 472 IMGFKA-GVE---AEKCIDKILRQTVK--GSLRWPRTMTGFC---EPLHSVNHP---KEGLSGTNHAGFYGWKQRI 535 Pseudomonadaceae
WP_012728536 461 ILYGAG-DKD---WLENFKSIREGVIS--KRLSWPTALLDDLYGEKGHKGTNHPqhQGAQAGNIPVDALESWAGRV 530 Tolumonas auensis
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