Conserved Protein Domain Family
RNase_II_C_S1
?
pfam18614: RNase_II_C_S1 (This model is not part of the current CDD release)
RNase II-type exonuclease C-terminal S1 domain
This entry describes the C-terminal S1 domain found in type 2 RNase exonucleases. DrR63 proteins from Deinococcus radiodurans are an RNase II-type enzymes (DrII). Structure analysis of DrII indicates that it has an N-terminal HTH domain which interacts with a flexible loop that connects two beta-strands from the conserved C-terminal S1 domain, forming a beta-wing fold common in wHTH domains.
Links
?
Statistics
?
PSSM-Id: 523372
Aligned: 94 rows
Threshold Bit Score: 34.8481
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
WP_015884002 418 EVFDGVVVDVAKpRGgdgaaadgtvrGAVVIADPAVDARVeapAgtELVLGERVRVRLVDVDVAARRVLFEPA 490 Beutenbergia cavernae
KRB92793     259 QHFRAIVSGVNA-HG-----------VWVKIFTPPAEGRLv-gEipELRLGQLLQVQLISTSVERGFIDFSLQ 318
WP_058718895 438 EVFSALVTGHGA-SG-----------IWVRLLTPPVEGMLv-gHapELRLGQRLRVRLVGCNIERGFIDFEYV 497 Paucibacter sp. KCTC 4...
WP_005799305 228 QKFDAVVTGRTE-SA-----------TWVRIFTPPAEGLLv-aGefNLEVGQKIRVKLVGTNVERGFIDFEQA 287 Acidovorax delafieldii
WP_046858260 547 WQGEAVVVEMEN-NR-----------ATLLIPELAMETKLr--VrqDLKLDSRLSVALREVDVEDQVVWFRPL 605 Sedimenticola thiotaurini
WP_007192561 548 WRGDGVVVDLDE-RR-----------TTLLIPELALEARVr--TrdTPSLNDRVRLAVTEVDVPGLASGFRVL 606 Thiocapsa marina
2_pfamImport   1 WKGEAVVVELGD-RK-----------TTVIIPELALEGKVr--AkqALALNQRIRLSVVEVDLPDLDCRFRVL 59 
WP_245526769 549 WEGEGVLVERRG-YQ-----------GVVLLPELGLEASIt--VpeALALNQSVRVRLGEVELARLEARFTLL 607 Marinithermus hydrothe...
WP_054965123 548 WQGEGVVVERQG-PK-----------GRVLVPELALETNVt--LpkTTEPGAVVTLQLLGVDLPALEPRFRAE 606 Thiohalorhabdus denitr...
WP_046843687 404 RAWEAVVVERRG-PQ-----------ATLLIPDLAFDLPLs--T--PAAPGTALRVRLGDVNLPNLTLRARVV 460 Deinococcus soli (ex C...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap