5IKF


Conserved Protein Domain Family
zf-CCCH_6

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pfam18585: zf-CCCH_6 
Chromatin remodeling factor Mit1 C-terminal Zn finger 2
The Snf2/Hdac Repressive Complex (SHREC) is the fission yeast nucleosome remodeling and deacetylation (NuRD) equivalent and plays a major role in transcriptional gene silencing (TGS) within S. pombe heterochromatin. SHREC consists of the chromatin remodeler Mit1, the HDAC Clr3, and Clr1 and Clr2 proteins. The Mit1 C terminus contains two zinc binding motifs (CCHC zinc fingers) at the C-terminus onto which the alpha helices from both Clr1 and Mit1 pack. The Mit1 chromatin remodeler uses its C-terminal domain to intimately bind to the N-terminal half of Clr1 to integrate into the SHREC complex. This is entry represents the second C-terminal zinc-binding domain found on Mit-1.
Statistics
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PSSM-Id: 497364
Aligned: 40 rows
Threshold Bit Score: 77.2554
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5IKF_A        176 EICFLCGTPHFSGRDTCPMLRNKEAIYRLKDSLSKSREPFHIKKQAMARLNSF 228  Schizosaccharomyces pombe 972h-
XP_016227909 1478 EHCGLCGLAHLGHGRTCPQLTQESHVKMLLQTLKESTESKELIDQATKYLRMI 1530
XP_008712160 1476 EHCGLCGIAHLGHSRTCPHLNDETQVGRLLQTLKESPEPREHVEAATKYLRMI 1528
XP_013280277 1462 EHCGLCGMAHLGHSRTCPHLNNEDQVMTMLQTLKESIESRELIDQATKYLRMV 1514
XP_054119373 1441 EHCGLCGIAHLGYSRVCPHLNSEEQILSMLQSLRQSTEPKWLVDSARHYLYNV 1493
XP_013328210 1433 EHCGLCGIAHFGYQRTCPHLNSEAQITVMLQSLKQSTEPRYLVDQAKQYLRNI 1485
XP_011126142 1606 EHCQLCGIAHFGEGPICPHLSSVTQVTTMLNTIKESNDPAQLQAIAKNYLRNR 1658
XP_016210889 1469 EYCNLCGLAHFGYGRVCPHLKSETMVRTMLTELKLSSEPKYLVDAAANYLRNL 1521
XP_013021922 1324 EICFLCGTPHFSNKEACPLLKDKRAVNVLRFLLAYSREPIITRILALKRLNNY 1376
Q9P793       1331 EICFLCGTPHFSGRDTCPMLRNKEAIYRLKDSLSKSREPFHIKKQAMARLNSF 1383 Schizosaccharomyces pombe 972h-
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