8IOJ


Conserved Protein Domain Family
Raf1_N
?
pfam18578: Raf1_N (This model is not part of the current CDD release)
Rubisco accumulation factor 1 alpha helical domain
This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive.
Links
?
Statistics
?
PSSM-Id: 523351
Aligned: 60 rows
Threshold Bit Score: 131.846
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
8IOJ_E        94 FDT-GGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLARAIKDYPNRRGDVgwLDFDyNLPGDCLSFLYYRQSREN 172 thale cress
XP_006827487 145 FDSpSSAPLLYELRLLSNTQRVAAAKYAMVNNLEIDGARELARAIKDFERRPASVr-AGFT-SSPGDCLAFSLFRQSAEV 222
KZN09522     103 FDL-GGAQLLYEIRLLSVAQRAEAARLIAREKFDVKGAQELARAIKDYPRRKKEKgwECFEySSPRDMLAFMYYRLALEH 181
XP_017223888 143 YDL-GGAQLLYEIRLLSVEQRAAAARLIARENFDVKGAQEVARAIKDFPRRKREKgwECFEyRSPRDCLAFLYYRLALEH 221
XP_004142574 154 FDT-GGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGDKgwEYFDyDFAGDCLAYMYYRLSREY 232
XP_003590938 156 FDS-GGAEVLYEIRLLSTSQRAAAARFIVEKRYDGKGAQDLARSIKDFPSRRGEKhwESFDyHLPGDCLAYLYYRQSKEN 234
B4FR29       166 FDSlGGPEVLYELRFLNARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEgwEAFSkDSPADCLAFARFRQSREA 245 Zea mays
XP_003573987 177 FDSyGGPDLLYELRFLNARQRVEAAKHAIDRRLEAKGVRELARSMKDFPQRRGDDgwDAFDrHSAGDCLAYARFRLSREA 256
CAL9069206   156 FDAgGGADLLYELRLLNAAQRAAAAYRVIEHRLDPKAAQELARAMKDFPRRRGDVgwDRFSaASPGDCLAYTHFRLSRET 235
KMZ73060     155 FNG-NGAEILYEIRLLSVTLRAASARHIVNQRLDAKLAQQLARAMKDFPRRKGDNgwECFLgSSPRDCLAYSYFRLSHES 233

8IOJ_E       173 KNPsDQRTSMLLQALGVAESEKAKNRLNTEL 203 thale cress
XP_006827487 223 RID-SERSALLERALTLAETEEARKRIDETI 252
KZN09522     182 QGV-EAREAGLEKALEMAETEKARERVLRDL 211
XP_017223888 222 ESF-EVRKGGLVKALEMAESERAKKRILEDL 251
XP_004142574 233 NSStERRTAALEEALKVVVTEKARDLIVGDL 263
XP_003590938 235 KNPsDPRTAFLQQALSAVESDKARNVILEEL 265
B4FR29       246 IDV-QDRVAELERALQVVETESGRARVELEL 275 Zea mays
XP_003573987 257 IAN-EDRMPELERSLDVVETETARARVELEM 286
CAL9069206   236 MSP-AERMASLDRAVEAAETDEARKRIEEEI 265
KMZ73060     234 LDL-AVKISTLNKALEAAETELAKRRINEEL 263
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap