5DMY


Conserved Protein Domain Family
Glyco_hydro2_C5
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pfam18565: Glyco_hydro2_C5 (This model is not part of the current CDD release)
Glycoside hydrolase family 2 C-terminal domain 5
Domain 5 is found in dimeric beta-D-galactosidase from Paracoccus sp. 32d, which contributes to stabilization of the functional dimer. It is suggested that the location of this domain 5, may be one of the factors responsible for the creation of a functional dimer and cold-adaptation of this enzyme.
Links
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Statistics
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PSSM-Id: 523340
Aligned: 178 rows
Threshold Bit Score: 68.2549
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
5DMY_A       777 LKADADRKTITADGKDLSYIEVDVTDANGHIVPDAANRVTFDVKGAGKLVGVDNGSSPDHDSYQADNRKAFSGKVLAIVQ 856 Bifidobacterium...
GAE84922     589 LRLEPENNNWVADGMDLQYIKVCAVDNKGRKVPTVTREVVFDVSGPARLIAVDNGDHKSNELFAGNKRQLHNGFAMAVLR 668
WP_008565867 692 LRLVPDKQTWKADGVDLQHVLVEVVDNKGRRILNDNRQVIFSVTGNAHLVGVSNGDICCNDSFAGQKIRLFQGSAMVILR 771 Segatella maculosa
WP_004344787 682 LRLEADDEMWRADGTDLQHVRVYAVDSKGRRSPMAQQLLTFSLKGDASLAALGNGDLIGDDLPTGIRQHLFRGSALAILR 761 Segatella buccae
EFI72121     681 LKLIADIENWKADGQDLQHIRIQAVDSKGRRVYAANNDLMFKVEGDARIIAVDNGNLYSNELHVANHRHLYNGSALVILR 760
WP_005846510 690 LKAEPDAEVWHADGQDLQHVRITALDSRGRRAVSAQQRLTFSVTGDARIVAVDNGNNASDELHAVAERSLCNGSALVILR 769 Prevotella dent...
WP_014182483 559 LKMTADRTVVLTDGTDDVQLVVEIVDDTGRVVAD-ERPVRLEVVQGGGIFPTGTSIELNPD-----NKGLLDGRGAIEFR 632 Streptomyces
WP_012582505 702 LKLIPDRNRISSCYGDLSYIKIVAVDEKGREVKNARNKIRVEVEGVGKLVALGSSDPLSQESFVTNEISLYQGRALAILK 781 Dictyoglomus
CDC03953     678 IRLMAEKPFVNRGEEDILFIHAELIDKAGNVILEGDDPVHFSVEGGGSFLAAGNAAVKTTTNYTSPDQRLCRGYAQAVIR 757
WP_006863014 688 ITLKPEETVIQAG--DIVYVPVEITGENGIVESNADEKLSVSVEG-GTLLAFGSADPCTQERYDAGSFTAYQGRALAVVY 764 Marvinbryantia ...

5DMY_A       857 STKEAGEITVTAKADGLQSSTVK 879 Bifidobacterium bifidum
GAE84922     669 SAQSAGKVKIKASVAGLKNVEMN 691
WP_008565867 772 AEKTVSKVTLQAIAEGLKAVSIR 794 Segatella maculosa
WP_004344787 762 AGYTPSKVRLIVSAPGLKGASLK 784 Segatella buccae
EFI72121     761 AGKTPSKITLTVTSKDFKTQKIT 783
WP_005846510 770 AGKKAGKVVLTIRDDKGKSQKLV 792 Prevotella dentalis
WP_014182483 633 SYH-AGPNRLRATAEGLAPSEIT 654 Streptomyces
WP_012582505 782 IMGIPGELKLKAWGENLKEEEIV 804 Dictyoglomus
CDC03953     758 TNGLLKPVTVRCAGERLPESKIV 780
WP_006863014 765 APQ-PGKIKISVSGEKLGTESVA 786 Marvinbryantia formatexigens
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