Conserved Protein Domain Family
SRA

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pfam18491: SRA 
SET and RING associated domain
This is the C-terminal domain found in PvuRts1I, a modification-dependent restriction endonuclease that recognizes 5-hydroxymethylcytosine (5hmC) as well as 5-glucosylhydroxymethylcytosine (5ghmC) in double-stranded DNA in bacteria. Structural analysis indicates that it has the typical SRA (SET and RING associated) domain fold (pfam02182).
Statistics
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PSSM-Id: 436540
Aligned: 17 rows
Threshold Bit Score: 121.678
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_006683161           110 QLKQQKYLSIYDDVSFMDIKDIANtVFGKNS-KRYQRSF---FK--VIDKMWLWCPKLsiivngdakSVAGGWLK----- 178
EPF71423               168 TYVDLGEISLEDHVVLKSRQDVCN-CFGYRG-QLDQQVCi-kHP--WEADTNIWFVRL---------YQHNHSVS----- 228
WP_048827468           143 TYIKRGEINLRDNVAFKTCADVAN-VFGHSY-KGYQRGGt-tHP--YYDDVMIWFPKL---------FPNGEWDN----- 203 Bacil...
WP_010861687           139 TYIQRGYIDLCDDVAFDKIASAVN-CFGHNY-AGWQRGGa-sHA--FEEGTIIWFPKL---------FPNGEWDN----- 199 Plesi...
WP_012156177           141 YLQSRGVIRASENVALRTSAEVCN-LLGHNY-KGWQRSSa-sVP--HYPNIRLWFPKL---------YPNEQWFN----- 201 Shewa...
2_pfamImport             1 ESLSQCMLAKGDE--FQSVGEYLS-LFGICD-KQETPDIywsQPlpNHLGIIIWSPE----------YQHPEWHNqgdts 66 
KuoIPMB:SSYRP_v1c08360  18 AILAKKEITTKDKIVFKLINSVLTtLFIDENrQSLLQVG---YK--INEQEYLWFPNLsldn-kkeqNINDGYAN----- 86 
1_pfamImport             1 KILQQKEITTDDQIIFRTIFDVLStLFTDENhLSTLTSG---YN--INHYQQVWFPNIvplq-qkelAIKKGYAN----- 69 
WP_025251457             8 EILKKKEITTDDRITFRTILDVISsLFTDENnISSLTGT---YK--ISENEQVWFPNFvldk-nrekEILNGYAT----- 76  Spiro...
WP_025363576             7 KILNEKKITTSDEIYFEKIADVIArLFTDYNgISQLQKG---YN--LNEVEQIWCLNVdeey-dldqKLSEGYYN----- 75  Spiro...
XP_006683161           179 FLAEDWTYIDESHQ-DSAIAEERKDNYMKev-nFGHERAVFAKYKDNLGF-NRYRFVGVFKTWGISPknESCIRYLRVDD 255
EPF71423               229 EITADGLLITEKFL-DDTHGKQQTLKPKD----GMNKRIVFSRIKDNLSHqVMYRFMGMFTFDSETI--ETGVVWRRVST 301
WP_048827468           204 SISPDGKIIREKNI-HEFKIDNHINEVIHn---QKHKRIVFAKVKGPLGH-IMYKFKGEFELDISASikERCLIWKRISE 278 Bacil...
WP_010861687           200 IITDDENTIYERNV-NDDKAVAHIEKTISe---GIHTRIVFAKVKDSLGK-TKYRFKGKYTLSVEETdfEKGLVWKRVAT 274 Plesi...
WP_012156177           202 HISYDGCEIHEYCI-ESETKKRQFIDKNLs---ENIQQMVFARVKDELGQ-TMYRFKGLFILDRDKTchESGVYWKRVAT 276 Shewa...
2_pfamImport            67 HLMPTITEWWTPTDaDATLADIRNHDNYLrsvsFNELRITFMKNITSEG----YTFLGIYKLAPSST--PQRLVWQRIAE 140
KuoIPMB:SSYRP_v1c08360  87 YLSSDGNFLYQFTAtTAIDKRKSQGEKYLq---NKIHFVTFGKINDKKKG-IGYHFLGIFIFVGFTDedCQTMIYQKIRD 162
1_pfamImport            70 YMSDDWTYIYYFNGtNNLIKQQKLGEKQLh---HKTQLITFAKLNEKKFG-IGYHFVGVFTFIGFLDqdCKTMIYQKIKN 145
WP_025251457            77 YPSKDLTKIFQVDThKTTENRIKLSQKQ-----KNLNLVVFGKFFEKEK--IGYHFLGVFVFDRFADedCKVMVYKRISK 149 Spiro...
WP_025363576            76 WVSNDGLYIYNFNAqKDLQKRLKDIDKLIa---TKTQFIVFKQTFKGTKK-SQYQFYGVFMYDKTLDd-gQTIAYKKISD 150 Spiro...
XP_006683161           256 KVDI 259
EPF71423               302 TVKT 305
WP_048827468           279 TVKT 282 Bacillus sp. B-jedd
WP_010861687           275 RVRT 278 Plesiomonas shigelloides
WP_012156177           277 EFEL 280 Shewanella pealeana
2_pfamImport           141 RLDL 144
KuoIPMB:SSYRP_v1c08360 163 NYQL 166
1_pfamImport           146 SYHF 149
WP_025251457           150 KCML 153 Spiroplasma sabaudiense
WP_025363576           151 EFKF 154 Spiroplasma culicicola
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