5D1O


Conserved Protein Domain Family
Lig_C

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pfam18330: Lig_C 
Ligase Pab1020 C-terminal region
This is the C-terminal region of RNA ligase Pab1020 present in Pyrococcus abyssi. Pab1020 catalyzes the nucleotidylation of oligo-ribonucleotides in an ATP-dependent reaction. This region contains both a dimerization domain and a C-terminal domain.
Statistics
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PSSM-Id: 497155
Aligned: 20 rows
Threshold Bit Score: 120.809
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5D1O_B       256 YAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIYPMLERIKSISAGEAAYEDTVIDvEDREAAEEF 335 Methanothermoba...
Q5V058       243 HAFELPFDYGRDFVFTRVIREAFQAVERGESPAAVRERARELGEAILEPAVETVRAVDAGDPVGETHTVR-GDPRTIDDL 321 Haloarcula mari...
1_pfamImport   1 YAFSLPFDRGRDFFFSRVIREAFQAVEFDEDDERLRDRAHDLGESVLLPAVETIREVQAGKTAGERHTVR-GDSESIDAL 79 
WP_014585929 247 YAFRYYNDYGQDFFFSRVVREGFQAAEWAEGEAEFLERCLRLGRSMLTPMRETVEAKMVGEPIVQEVEILvRDLQTARDF 326 Methanothrix ha...
Q6M095       267 IAFSYVYDLGIDFMFSRLVREGYQSFEKCESEEERKKRAHELGESILLPMVETITEISKESVAKECFELYfDSEEEFIEF 346 Methanococcus m...
WP_013909770 262 VVFPYLGEIDPYFVSLRLIRLALNLYEFEEFKEEV---YSVLGKNLFE---ETLENFKTERLLQETFRVRfKKESNFHAM 335 Thermodesulfoba...
BAU22892     241 VVFPYLGEVDPHFISLRLIRLLLNLYEFEEFKDEV---YKTLGTNLFE---EALKSIKEKKVFDEVFRVRfKNLENYHAL 314
WP_008287315 237 VTTKNMLQLPPEYYTNRVLR--LVLFMEEEGIERTEHLYEELGRAFIDGLFEAIEQFKREHKVYRTFRCRfRSRDNAVAL 314 Hydrogenivirga ...
GAB61500     250 VTAPLMAEMMSEFFTHRIIRAALSIHEHTHSLKP--EVFAQLGESLLKPIYESITKVAREEVIEERFLLRfREEKNIQRM 327
WP_052563652 248 VTAPLMAEMASEFFTHRIIRAAMFIHEHGNSLEP--EVFVQLGRVLLKPVYESVTKAAQDKLIDEKFSLRfREEKNIQKM 325 Candidatus Broc...
5D1O_B       336 IRHLVRLGVSATLADYR----DGRATIR--RFYQSTTDRINNYLKGG 376 Methanothermobacter thermautotrophicus str. Delta H
Q5V058       322 LSYFHDQGLELHVEHDEt--dGDQRVVTftKIAQSTRDKTRYYLEGG 366 Haloarcula marismortui
1_pfamImport  80 LDHLRNHSLTVEIESDRr--eDGERIVEfvKVAESTMGRTQYYLDGG 124
WP_014585929 327 EEHFRRMGVRAIFDPPRn--sRGGHLVKikRLVLSTNDKTESIVEGQ 371 Methanothrix harundinacea
Q6M095       347 INYLKTMHINFAVESREyi-kKDIFKAKinRIYNSTSDKIKSHLDGN 392 Methanococcus maripaludis
WP_013909770 336 LAHFRIAKVSIEVKKTEw--kNGYFCVEfsKIYPKATQFWKSKLEGW 380 Thermodesulfobacterium geofontis
BAU22892     315 LAHFKQARVNIEIIKQSw--eNGYFLVEfkKIYPRATQFWGQKLEGW 359
WP_008287315 315 MELLHRTSRHIQVIERElkqeGDYWILTfdKVFLNMTGLLGHLLSGG 361 Hydrogenivirga sp. 128-5-R1-1
GAB61500     328 IDHLYKCKVKFEVLSKSr--eGDYWHVRfaKKCYASYEILQKHLGGS 372
WP_052563652 326 IDHLYRCKVKFDVLSENk--eDAYWCVKfvRKCYASYEILQKHLEGS 370 Candidatus Brocadia
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