3CYM


Conserved Protein Domain Family
DNA_pol_A_exoN

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pfam18305: DNA_pol_A_exoN 
3' to 5' exonuclease C-terminal domain
This domain is found just after the C-terminal region of the HRDC domain (pfam00570) in 3'-5' exonuclease proteins (pfam01612). The domain is carried by species such as Streptomyces griseoaurantiacus and Streptomyces albulus.
Statistics
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PSSM-Id: 497130
Aligned: 13 rows
Threshold Bit Score: 99.3337
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3CYM_A            348 APKSIRVWKERYPERLQVLNRVRKAVSQIAEDTRTPVEIVIKPQYLRNLCWTDEP-----RKRDVARFLSEQGARDWQVS 422 Bifidobact...
WP_236952235      294 GPPPPNRWADKDPAAAARLSAARASLSALAESLRLPVENMVQPDLIRRICWTPPDa---iDVDGTSTALRAGGAREWQIN 370 Kibdelospo...
WP_010850966      310 GPPPARSWADKDPVAAARLNATRAALAVFADEHTIPIENVCSPEPLRRVVWTPPTt---fDTESFEAALLAEGVRRWQAQ 386 Phycicoccu...
WP_014846579      320 GIPQPRSWERNSPERWELWKKVRADVDALAKELGIQPSLIASSAILQAFVHNWEP------GSDPRTALLGAGSRNWQAD 393 Arachnia p...
WP_047253219      311 GAPHHSTWANYHPEAWEALTHFRAGIEEISLDLGIPVENLLQPSMAREAIWAATEtreigTENDLVGWLHDHGAREWQVE 390 Corynebact...
WP_051636246      317 GIPNHRIWPNRYPEADARLKNARAALVKISEELLLPVENLLTPDLVRQLCWEPPEl---iTPETVSKALKTMGAREWQIG 393 Rhodoluna ...
WP_067160082      297 GLPPPRAWVDRNPPADVRLKAVRPRIEQLALDLRMPTENLLTPETLRRVAWAPPEp---lSPEAVADALAGHGARPWQIE 373 Microbacte...
CeBiTec:AFR_35190 294 GPPPPHRWAERDPIAAARLQRCRQVVISTAEAHTLPPENLISPDFIRRLAWSPPEe---vTPQAVADTLLGFGARNWQVV 370
WP_013863198      325 GPPQARMWASKDPVAAKRLTRVREVLGAVAQQYELPMENLLTPDHVRRLAWSPPAp---lTEESVDAALAQLGAREWQRR 401 Microlunat...
2_pfamImport        1 GLPHPRAWAEKNPAAANRLEAAKLVINEVSEHWNIPGENLLTPKYLRELCWNAPTr---iSETSVREKLQTLGARAWQRD 77 
WP_068375960      326 GPPPANRWARRDPDAAERLAVVRAAMTELSEKVSVPVENLLMPDVLRRLVWDWTPlspadARVAIDAKLIEGRARTWQRE 405 Rhodococcu...
WP_005192972      312 GLPPYNRWDRGNPEGAERAAAVRPVIGALAEENTLPPENLLAPDIVRTLCWEGVElp--aTPKAVDARLAAGGARSWQRA 389 Gordonia a...
Q8FPI3            317 GVPDRRYWSSFHPEEYEILQGIRADIDDLGAELNIPGENILQPAALRAVVWMSTNtgevhDQDSLMGALRDYGVRPWQVE 396 Corynebact...
3CYM_A            423 LVAESVSRAI 432 Bifidobacterium adolescentis ATCC 15703
WP_236952235      371 LVAELLSKAL 380 Kibdelosporangium phytohabitans
WP_010850966      387 IVAPMLADAF 396 Phycicoccus elongatus
WP_014846579      394 LLLPLFAKHL 403 Arachnia propionica
WP_047253219      391 LVAPLLVDAL 400 Corynebacterium testudinoris
WP_051636246      394 CTAESLATAL 403 Rhodoluna lacicola
WP_067160082      374 RTVPVIVEAF 383 Microbacterium sp. TNHR37B
CeBiTec:AFR_35190 371 LLADNIAKAL 380
WP_013863198      402 LTVPGLTEAL 411 Microlunatus phosphovorus
2_pfamImport       78 LISAKLAEAL 87 
WP_068375960      406 LVVPVLADAL 415 Rhodococcus sp. EPR-157
WP_005192972      390 LVSEALAGAL 399 Gordonia amarae
Q8FPI3            397 QVSPILINAL 406 Corynebacterium efficiens
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