Conserved Protein Domain Family
SMODS

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pfam18144: SMODS 
Second Messenger Oligonucleotide or Dinucleotide Synthetase domain
Nucleotide synthetase enzyme of the DNA polymerase beta superfamily. Experimental studies have demonstrated cGAMP synthetase activity in the Vibrio cholerae DncV protein, a member of the SMODS family. The diversity inherent to the SMODS family suggests members of the family could generate a range of nucleotides, cyclic and/or linear. The nucleotide second messengers generated by the SMODS domains are predicted to activate effectors in a class of conflict systems reliant on the production and sensing of the nucleotide second messengers.
Statistics
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PSSM-Id: 497028
Aligned: 29 rows
Threshold Bit Score: 159.351
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Q7C_2620  34 MTPNAR-FSEFIKD-ITPsnTTVSNCQSAHKDVRTALLNDD-ELKN-KIKRIILGGSYKRSTAIRPRVKNGSTERPDVDL 109
KFI52304       1 MTLDKY-FTKFLTD-IEPsrSTKDEIKRIHSNLREFLSEDD-DCAA-IVDSTFLSGSYAKNTSIRPVLNDG---KRDVDI 73 
WP_015120952   1 MITQAQ-FLKFLQD-IEPsyTTKNNASSSHSRLREFLNKHP-EFGQ-YILTTFLSGSYKRDTAIRPQTKKGNTERPDIDI 76  Rivularia sp. P...
WP_009805252   1 MTVPNArFTELLQD-IEPssTTKSHASTAHIKMREHLRTQS-DFKD-LYTGSFLSGSSARDTALRPRTSAGQVERPDIDI 77  Pseudooceanicol...
WP_056876389   1 MPTQQQ-FIDFLRE-IEPspSTTAVCSSAHNTLRANLAGHA-TYSL-IHDNTFLSGSYARDTALRPRMTNGVLRRPDVDI 76  Pelomonas sp. R...
WP_141305414   1 MSQSSD-FKSFLINkVNLnqTRLNVLSQRVAAIENFLANDD-VLGE-SITEVIPQGSFAHGTIIKPVGTK----EFDADV 73  Sinomonas atroc...
WP_038642625   1 MKLVKH-FNEFLKNeVNLnqHRIDTLEYRVQVVTNFIKGSD-SFKS-AFIEAIPQGSYAHRTIIKPTAKKK---VFDADV 74  Pseudoalteromon...
WP_066884641   1 MKLVNQ-FKTFLSEeVNLndTRVSQLGTSVEAVQKALKASSwGPK---ILDFDAHGSWAHGTIIKPFTGG----EFDADL 72  Dechloromonas d...
WP_011746462   1 MKLTAT-FKSFLQDtVNLndSRIASLESSVDAIKKFIRQSE--YKP-KFIAFHEQGSWAHETIIKPLNGD----EFDADL 72  Paracoccus deni...
WP_013834156   1 MKHVEH-FRNFLKDtVNLnqTRITDLENSTGAIERFIRQSTwEPTIkRFAEQ---GSWAHDTIIKPVDQG----EFDADL 72  Novosphingobium...
jgi:Q7C_2620 110 YVVVDGSPLFsDPSDLMDEIYAALnraRKDLGITSLKRNRCSIALSMNKADLDVSPLLERQHd-A-LYRIGNRITGEWYK 187
KFI52304      74 DIVTNFTMND-DPAVVLEKIEDLL---HKQAKYSNTKKQSHSICVEMSGLNVDVVPLIREDD--S-SYYIGSRDNHTWSK 146
WP_015120952  77 IVVTIHTIND-SPAAVVELLYIIL---KTEYEN--IRRQARSIGIQAPLADMDVVPIIAPYGleN-TLYIPDRKLEKWLV 149 Rivularia sp. P...
WP_009805252  78 IVVTDFSTDD-DPEWVLKKVCRAIedkGIGYPV--ERMNRRSVRVNTWRAEMDIVPVVEDGT--E-GYWIADRESGTWQF 151 Pseudooceanicol...
WP_056876389  77 IVVTKHKRTD-TPSDVIKSLHRAVk--SLGYAS--VESNRRSICVTLTSVEMDVVPIIPNPWqtG-GWLIADKSTQEWIP 150 Pelomonas sp. R...
WP_141305414  74 LVPMDEVDGW-TAADYVQKLYEAFg-rSATYATMRSRKKRCVTLDYAGDFHLDVVPFVTRQG----EAYVTNRITNQFEL 147 Sinomonas atroc...
WP_038642625  75 VVYLKPIDGW-EAKDYIEQIYKTFn-aSKHYQGKVSRQTRCVKLNYAGEFHIDIVPCIRSKFlfTeTERVCNRLTNEFES 152 Pseudoalteromon...
WP_066884641  73 LVIVEPVEGW-EAKDYINKLGAFFe-gHSTYKDKVHRYSHCVTIEYAGERRIDIAPCVKDRLwsN-MYEVCNRITNEFET 149 Dechloromonas d...
WP_011746462  73 LLAVEPVDGW-SASDYVAKLGKIFs-eSATYKDKTKVYDFCVTIVYANDKRIDISPLVKDRGgiR-RYEVCDRGNDAFVQ 149 Paracoccus deni...
WP_013834156  73 LVMVDPVDGW-TAEDYVKTLGKTLk-eSSTYGEKTKVWDYCITVTYAKEHKVDVAPCVVERIwaN-TLEVCNKKHDEFEE 149 Novosphingobium...
jgi:Q7C_2620 188 TDPEEHTNWSAQQN 201
KFI52304     147 ATPKEHIQWSSDVN 160
WP_015120952 150 TNPPGHTVWTTQVN 163 Rivularia sp. PCC 7116
WP_009805252 152 TNPPVHKTWSAEQN 165 Pseudooceanicola batsensis
WP_056876389 151 TNPMGHTDWAIKIN 164 Pelomonas sp. Root1444
WP_141305414 148 AAPDEFTEWLEEKN 161 Sinomonas atrocyanea
WP_038642625 153 CSSIEFSKWVQKKN 166 Pseudoalteromonas piratica
WP_066884641 150 TAALDYTDWVVGRN 163 Dechloromonas denitrificans
WP_011746462 150 SEPMEYTAWIKQRN 163 Paracoccus denitrificans
WP_013834156 150 SRPEEYTQWLKDRN 163 Novosphingobium sp. PP1Y
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