Conserved Protein Domain Family
RlmM_FDX
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pfam18125: RlmM_FDX 
RlmM ferredoxin-like domain
This domain is found in Ribosomal methyltransferase RlmM (YdgE) present in E. coli. RlmM catalyzes the S-adenosyl methionine (AdoMet)-dependent 2'O methylation of C2498 in 23S ribosomal RNA. The domain is ferredoxin-like and forms part of the THUMP domain which binds RNA. THUMP domains typically have low sequence similarity.
Links
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Statistics
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PSSM-Id: 497010
Aligned: 9 rows
Threshold Bit Score: 112.813
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_008985858   1 MKQLLVYCRAGFEKEAAAELQDQAAAFAVFGFCKLKANSAFVIFEAYDSEALQRFYRDFDFQHFIFIRQWL 71  Alishewanella agri
CBL44784       1 MPSILLYTRPGFERDCAAEAMYHAENAGLSGYVNAKPDSGWLQFCSEDASGVREFVRHFDFSLWVFARQWF 71 
WP_007017125   3 MQQVVLLCRQGFEGESAAEIQHLAAEAGCFGYCKTH--DGWVSFIA-EDDVLKTLIEHVSFKRFIFSRQWF 70  Bermanella marisrubri
WP_055024976   1 MKNLFLFCRAGYEKDCAAEIQQRAAELNIGGFVKTNTNDAYVIFQSFEEDGGEQLAKRIELNSLVFARQMF 71  Shewanella
WP_013033828   1 MECLIAYCRAGFEGECAAELQAQTTEQGLAGYARAKPGTGYVVFTLYEKGAAQQFTDRISLLDLVFARQLF 71  Nitrosococcus halophilus
WP_057181549   1 MTSIVLFCRPGFEKECGAEIQEKAAWNEMYGYLELKKNKGIVFFHLQESEHGEALMNKLPLKRLIFARQWF 71  Colwellia
WP_048691966   1 MSIYVLYCRAGFEKDCAAEIQARSTDVEMFGFCRLKDNQGFVEFEVSEPE-AGLLFKKIKLRDLVFTRQWI 70  Catenovulum maritimum
A1SV95         1 MLGILLYCRPGFENDCANELQDKATALEVFGFVKTKRNSGYVFYQCYDPQQVEYLLEKLDYKQLIFARQLI 71  Psychromonas ingrahamii 37
WP_047137380   1 MSGLLCYCRPGFESDLAAELTERAAGVHVAGYAQARRGDGYVLFHSD---NGPSATHELPFRELIFARQKL 68  Luteimonas sp. FCS-9
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