6EPC,4CR2


Conserved Protein Domain Family
RPN5_C

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pfam18098: RPN5_C (This model is not part of the current CDD release)
26S proteasome regulatory subunit RPN5 C-terminal domain
This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to pfam01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degradation machine: the lid, the base, and the core. The helices found at the C terminus of each lid subunit form a helical bundle that directs the ordered self-assembly of the lid subcomplex. This domain which comprises the tail of RPN5 along with the tail of Rpn9, are important for Rpn12 binding to the lid.
Statistics
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PSSM-Id: 523120
Aligned: 38 rows
Threshold Bit Score: 41.8281
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6EPC_P       422 NNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453 Norway rat
Q6C9M3       410 NDILNTWSANIGTLLDHVESIGHLITKEEMMN 441 Yarrowia lipolytica
XP_002489957 406 NELLNTWSSNVDELLEHIETIEHLVNKEEMMK 437
XP_020070821 408 NELLNEWSNNVDSLLGHIETIGHLITKEEMMA 439
XP_024326340 439 DDVLNEWSGNMKSLLGLLERIDHLITKEEMMA 470
XP_007744255 445 DEVLDEWGNSMKGLLQLLERVGHLMQREEMMA 476
EPS36811     412 NEILNEWSGNMKGLLGLLERVDHLITREEMMA 443
KKY33233     414 DDILNEWSYNMKDLLSHLGKIEHLITKDEMMA 445
XP_007872756 408 NVILNEWSWNIGTLLEKIEKVRQMILKEEMQA 439
4CR2_P       409 SQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440 brewer's yeast
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