2HVQ


Conserved Protein Domain Family
T4_Rnl2_C

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pfam18043: T4_Rnl2_C 
T4 RNA ligase 2 C-terminal
This is the C-terminal domain of Enterobacteria phage T4 RNA ligase 2 (Rnl2). The C-terminal domain consists of a four-helix bundle. The C-terminal domain is thought to be critical for binding the Rnl2 to adenylylated nicked duplex. This is known as step 2 of the ligation pathway.
Statistics
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PSSM-Id: 496942
Aligned: 15 rows
Threshold Bit Score: 78.8937
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2HVQ_A       246 VEL-SEADNKLVGILACYVTLNRVNNVISKIG-EIG---PKDFGK---VMGLTVQDILEETSRE---GITLTQADNPSLI 314 Tequatrovirus T4
WP_014798107 255 SSN-TEELHFLVEEIRNYVTQNRLQSAISKIG-SLDfdnLKRIKE---IENEFLRDILTDFDENndaILKELSNQQKNWI 329 Bernardetia lit...
XP_002676530 285 KFI-DDKSEQAMSDVLSYMNENRLEGNISKLG-DIFn-fPKIRES---CVYLLAQDTLKDYREEnseVWDQLPKEDRKAI 358
XP_002672691 300 TFDnESVSTPVFDLIVQYLNDNRLESAISKIG-NIIt-sFKLRNK---CLALFVQDILADFKKEhsnEWDSLAKVDQKAI 374
WP_015181264 270 TQG-LSIEEELSQEMLALVTERRLINVISKIG-RVS---RSDWDKkqeVAQLLMQDVLETFNEEwesIFSGLSGENQQIL 344 Allocoleopsis f...
WP_002692607 253 AGE-STVLGELMQAVHQLVNKNRLQNVCSKIG-IVNladAAQKEQ---VRADMEADVWEAFWEQysdRYFQITSEEQAQV 327 Microscilla marina
XP_004333230 283 RRVkKEAVDTVYEEVERYITVNRLHNLESKMG-PVT---RDNAGE---AAAALAADAMKDLIGDyeeTWAVIEEGVREVV 355
EER75593     222 HSQ-PHELSALAIDVERYVTDNRVMNVSSHGI-ELD---FKNFGE---LSKAVKADIIKEYVRD---EGVSQELVEPV-V 289
YP_008320551 224 PKL-SNEQVEALNELGKYITKQRVLNVCSHGDfDLI---DKNIGK---IMLAVKQDAANEFNKE---VGSSFTEKELIGL 293
KPA10543     240 PVY-SDEVNKLCEALDLLVTQNRLRNVISKIG-AIQ---KSEFGK---LMQAFSKDCLEDFNKDhasEFQQLDKKEQKYI 311
2HVQ_A       315 KKELVKMVQD 324 Tequatrovirus T4
WP_014798107 330 EERIKVDCSK 339 Bernardetia litoralis
XP_002676530 359 SGALPAIAKR 368
XP_002672691 375 SKYLSDEAKE 384
WP_015181264 345 MEQLHQKSQK 354 Allocoleopsis franciscana
WP_002692607 328 NAEVTQAIEQ 337 Microscilla marina
XP_004333230 356 HKNVRSMAAQ 365
EER75593     290 NKELNKQIST 299
YP_008320551 294 SNAYSGEIAK 303
KPA10543     312 TRNLNNTCSK 321
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