6QFO


Conserved Protein Domain Family
GalBD_like

?
pfam17974: GalBD_like 
Galactose-binding domain-like
Proteins containing a galactose-binding domain-like fold can be found in several different protein families, in both eukaryotes and prokaryotes. The common function of these domains is to bind to specific ligands, such as cell-surface-attached carbohydrate substrates for galactose oxidase and sialidase, phospholipids on the outer side of the mammalian cell membrane for coagulation factor Va, membrane-anchored ephrin for the Eph family of receptor tyrosine kinases, and a complex of broken single-stranded DNA and DNA polymerase beta for XRCC1. The structure of the galactose-binding domain-like members consists of a beta-sandwich, in which the strands making up the sheets exhibit a jellyroll fold.
Statistics
?
PSSM-Id: 407821
Aligned: 17 rows
Threshold Bit Score: 324.701
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6QFO_A          915 DDVRIVENQYSGIT-YEKDGTLKSLTNGFENNAQGIWPFVVSGSEGVEDNRIHLSELHAPFTRAGWDVKKMDDVLDGTWS 993 
KFJ08221       1178 DDVRVVANAYNGIT-TDSSGSLVSLTNDFENNAQGIWPFVISGSEGVEDNRVHLSELHAPYTQAGWDVKKMDDVLQGDWS 1256
kribb:BBB_0248 1217 DDVRVLENGYKGLT-LNADGTLKTLTNDFEDNAQGIWPFVVSGSEGVEDNRIHLSELHDPFTQAGWDVKKMDDVLDGKWS 1295
Q8G712         1248 DDVRIVENQYSGIT-YEKDGTLKSLTNGFENNAQGIWPFVVSGSEGVEDNRIHLSELHAPFTQAGWDVKKMDDVLDGTWS 1326 Bifidobacte...
KFF31755       1225 DDVRILENDYDGLS-FESDGTLKELKNDFESNPQGMWPFVESGLEGVEDNRSHLSELHAPYTQAGWDVKKMDDVLQGKWS 1303
EFW24042       1243 DDIRIVQNNAENAK-YDDKGQLTEFKQDFEENVQGIYPFVIGGIEGVEDNRTHLSERHDKYTQAGWDVKRMDDVLEGKWS 1321
KOP71034        961 DDIRIVENDAKNQV------SSNKFVQDFENVAQGIYPFVIGNIEGVEDNRTHLAELHAPYTQRGWNQKIVNDVIAGKWS 1034
KXT73954        795 DEIRIFENASSMYGgNHDTGNGV-FKQDFENVGQGIFPFVIGGIEGVEDNRTHLSEKHAPYTQRGWNDKKIDDVIEGEWS 873 
EEW38171       1264 DEIRVFENKSVMYGdNHDTGSGK-FKQNFEEVPQGIFPFVVGDVEGVQDNRTHLSEKHEPYTQRGWNGKKVNDVIEGDWS 1342
ESK65031       1208 DEIRVFENQSKMYSgKHDTTPGT-FKQDFEEVPQGIFPFVIGNVEGVEDNRTHLSERHDPYTQRGWNDKKINDVIEGNWS 1286
6QFO_A          994 VKVNGLTQKGTLVYQTIPQNVKFEAGAKYKVSFDYQSGSDDIYAIAVGQGEYSAGs-----------VKLTNLKKAL--G 1060
KFJ08221       1257 VKINGLTQKGTLVYQTIPQNVKFDAGRKYKISFDYQSGSDGAYALAVGQGEFATNg-----------AQLTDLEKHL--G 1323
kribb:BBB_0248 1296 VKANGLIQKGTLIYQTIPQNVKLEPGETYKVSFKYQSGSDDIYAIATGDGEYNASt-----------VKLTNLKKAL--G 1362
Q8G712         1327 VKVNGLTQKGTLVYQTIPQNVKFEAGAKYKVSFDYQSGSDDIYAIAVGQGEYSAGs-----------VKLTNLKKAL--G 1393 Bifidobacte...
KFF31755       1304 LKVNGLADYDYLVYQTIPQTVHLEPGEAYEVSFDYQSGSDGIYAFTTGEGQYDPAr-----------DQLSPLKKAL--G 1370
EFW24042       1322 LKTNGLVSRSDLVYQTIPQNLRLEPGRTYKVSFDYQMGSEGIYAFIQGDGEYGSG------------TKLLDLEKGL--G 1387
KOP71034       1035 LKTNGLTEREALVYQTIPQNFKFKPGVTYKITFDYEAGSDGTYAVVTGNAPFEEKg----------vLTKDELKSTAssD 1104
KXT73954        874 LKTNGLVSRRRMVYQTIPQNFRFEAGKTYRVTFDYEAGSDATYAFVNGSGEVLWKqegnqwisdlshASIHELPNTW--K 951 
EEW38171       1343 LKTNGLSGYDKLVYQTIPQNFRFEEGKTYKVTFDYEAGSNGAYSFVIGNGENSRRs----------kLTKYDLENTW--E 1410
ESK65031       1287 LKTNGLTGRDKLVYQTIPQNFRFEAGKTYRVTFDYEAGSHDAYAFVEGDGEYTRRs----------kLKMHSLRNTW--E 1354
6QFO_A         1061 ---ETGKAEFELTGGCNGDSWFGIYSTATAPDLQG--ST-GNAQDFGG 1102
KFJ08221       1324 ---DTGHYEFEITGDVNGDSWFGIYSTSNAPDTQG--TS-GNAANFGG 1365
kribb:BBB_0248 1363 ---EDGTAEFEITGSITGDSWFGIYSTSTAPDLQN--TS-DSAANFGG 1404
Q8G712         1394 ---ETGKAEFELTGGVNGDSWFGIYSTATAPDLQG--ST-GNAQDFGG 1435 Bifidobacterium longum
KFF31755       1371 ---TTAHARFTVTGAPNGDSWFGISSTDRAPDLQG--ST-GKAQDFGG 1412
EFW24042       1388 t---TRHFETTIVGALDGQSWFGIYSTNQWPQYDKagIS-GNEQNFGG 1431
KOP71034       1105 knaKAGTYSFTLTGDETGQSWFGIYSTSKAADTQG--VK-DSQANFNG 1149
KXT73954        952 gsdKAKTATFLVTGAEDGNSWIGIYSTGHDSQTNG--DT-GGDANFRG 996 
EEW38171       1411 kssKPKRVSFYVTGEKGGNTWVGIYSNARGADTKG--DTnNNEINFKG 1456
ESK65031       1355 gsdKPGKASFIVQASDSGNTWVGIYSTSRGSDNKG--ET-GSAVDFRG 1399
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap