1RKT


Conserved Protein Domain Family
TetR_C_17

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pfam17922: TetR_C_17 
Tetracyclin repressor-like, C-terminal domain
TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain present in Yfir transcription regulator proteins found in Bacillus subtilus. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.
Statistics
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PSSM-Id: 496841
Aligned: 10 rows
Threshold Bit Score: 128.202
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RKT_A        87 SISSYLDELTEGLRDVADTLAPVQFEYL--VTA-WR-NEERRQ--YLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATI 160 Bacillus subtilis
WP_004435994  88 GVLQFLESQEQEIMEVDESLIPVILEYY--MID-LR-EKTKDA--FLFNRYQKAVKVVELLFQKGVVHGEFKPVIPISEV 161 Bacillus methan...
WP_011948348  86 QLIVWIEDILDDICEIDKTLTFAKTEFF--IAVnYKaDKDKFT--YIKDRHNRLEKKIKNIIEDGIERKEFYPQMCINSI 161 Clostridium bot...
WP_003391162  86 QLTSWIQKQQKEIEAIERSLLLANSEFFlsIHS-QP-ENESRR--YLTARYQRMAEAIVDFVQKGTARMELQPRLPAESI 161 Brevibacillus b...
WP_024028730  85 KIEYFLDSQAAGFEGIKQSIVPVAYEYF--MTA-WR-EEKRLP--LLQNRYEQAVTELNSFIQEGITSGEFPPELSETAI 158 Neobacillus vireti
WP_231566560  84 ALETYLDERVEAMKNPNLGFAAVAFEYF--VMS-SR-ETDRSP--YIQERLKRNKAIFTEFLQAGVDRGEFKPLTDLESI 157 Pontibacillus m...
O31560        87 SISSYLDELTEGLRDVADTLAPVQFEYL--VTA-WR-NEERRQ--YLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLATI 160 Bacillus subtil...
WP_023509038  87 ALEDYLQNLES---EASDPFSIVVYEYF--VTG-WR-TEERRN--YLARRYENGKAIFLRLFEEGVRRGEFSPKQPLEAI 157 Sporolactobacil...
1_pfamImport   1 AIQAYQKVVCQSLP---NPYGIVMYEYS--VTR-WR-NPERKA--FFQKRYTRAMKSFLALLEEGVKQGEFHPVQPLETI 71 
WP_012684497  86 QIIKWVNKQQGEIEKIDQTLSKANSEFF--LSL-KD-QQKQQSypYITTRYEKLVDVLTAFFAHGTETGEFKPQLPPEVI 161 Brevibacillus b...
1RKT_A       161 AKFFLNXNDGIIQNALYFDEEKADVS 186 Bacillus subtilis
WP_004435994 162 ARFVVAFLDGLIMEAIYLGTEEVKIK 187 Bacillus methanolicus
WP_011948348 162 AIYFISFFDGLMLNRFNLDMDRDKLE 187 Clostridium botulinum
WP_003391162 162 ALYLISFIDGLMLDTFQLGPEKTRVS 187 Brevibacillus borstelensis
WP_024028730 159 TKMIISMLEGLNISSLFLEQKLVEAQ 184 Neobacillus vireti
WP_231566560 158 VMFTINLTDGMVLYKLVLGFDTGKIV 183 Pontibacillus marinus
O31560       161 AKFFLNMNDGIIQNALYFDEEKADVS 186 Bacillus subtilis subsp. subtilis str. 168
WP_023509038 158 NSFFINVNDGISMEATLLDEKTVRVA 183 Sporolactobacillus laevolacticus
1_pfamImport  72 VNFMVNIWDGLILMAQVEEPERVAVG 97 
WP_012684497 162 ARYLISVIDGLMLDTAHLGPEKTKVS 187 Brevibacillus brevis
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