7KSF


Conserved Protein Domain Family
RT_RNaseH_2

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pfam17919: RT_RNaseH_2 (This model is not part of the current CDD release)
RNase H-like domain found in reverse transcriptase
Statistics
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PSSM-Id: 523021
Aligned: 144 rows
Threshold Bit Score: 67.9152
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7KSF_A         424 WSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSA-GYVRYY--NETG-KKPIMYLNYVFSKAELKFSMLEKLL 499  Eastern chim...
CAK44870       166 WTWRQDLAFENVKRLEQRMLDTAYFDPTRKCTLRTDASSFAiGAQLMQggL------TCAIISRRLTPPERNYTVTEREL 239 
KFX87757       289 WTSTQKLAFAQLKQQVVNHLQLYKFDPLTDLHIMTDASFFAiGGWLFQtiEG-K-LRSIALVSRGLSPAERNYTTTEREL 366 
8_pfamImport     1 LNSQEITSFNNCIKMICNSISLTPYTSDMKLVLETDASTKAiAAVLKNdkK-----QIIECWSRSLKEIERRYPIQHLEA 75  
KYP76024       238 WGSEQTKAVQEIKKIAQNPPALKILGDGKR-ILQTDASDHYwGAVFIEevQGRK--FYCGHASGQFKEAEKHYHTTYKEA 314 
EDK47117       918 WDPTTKRFFHQIITVLTNQPILQPLNFKDLITVHTDASTDSwGGVLQNtnAAGE-SKLVLCYSGKFHGSEKNYTIYEKEL 996 
Q87040         428 WTEDNTKQLNKVIEALNTASNLEERLPDQRLVIKVNTSPSA-GYVRYYneSGK---KPIMYLNYVFSKAELKFSMLEKLL 503  Pan troglody...
64_pfamImport    1 WTPVHEEALRQLINEIHTYQALGPIHPDAPFHVYLTIGATGmSYALWQesETAP-RRPIQFGSKSWQGSQANYTPYEKVL 79  
XP_020426808  1207 WSDDCQLAFDTIKSAIKEKPSLFPPNYDLPFIFECDASDVGtGYRLFQlvDGKE--NVICYGSKKLKDSETRYSTLEKEL 1284
65_pfamImport    1 WTNSLTDLVKTIKDRAKSLPCLTLANPAWPKIVETDASDMGyGGILKQinPHDKnEYLIQFHSGKWSDAQRKYATVAHEM 80  
7KSF_A         500 TTMHKALIKAMDLAMG--QEILV 520  Eastern chimpanzee simian foamy virus
CAK44870       240 LAVIYALEKWFPLLEGs-PGIRV 261 
KFX87757       367 LAIVFTVKKWRHYLEStrANIII 389 
8_pfamImport    76 LSVIEGIEQFKWYLLF--KNFKV 96  
KYP76024       315 LAVKNGIKKFDFHLRG--YHFEV 335 
EDK47117       997 FSIYKTFDAIHPLLFGftGVIHL 1019
Q87040         504 TTMHKALIKAMDLAMG--QEILV 524  Pan troglodytes foamy virus
64_pfamImport   80 LAAYTALRETEELTQN--RAITI 100 
XP_020426808  1285 LAIVTALKANYYHIFG--RDIEI 1305
65_pfamImport   81 LTIVKCVLKFQDDLYN--QNFVI 101 
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