8R0S,8WUS


Conserved Protein Domain Family
RT_RNaseH

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pfam17917: RT_RNaseH (This model is not part of the current CDD release)
RNase H-like domain found in reverse transcriptase
DNA polymerase and ribonuclease H (RNase H) activities allow reverse transcriptases to convert the single-stranded retroviral RNA genome into double-stranded DNA, which is integrated into the host chromosome during infection. This entry represents the RNase H like domain.
Statistics
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PSSM-Id: 523020
Aligned: 109 rows
Threshold Bit Score: 76.0223
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8R0S_A        444 PEEKLIIETDAS-DDYWGGMLKA-IKINegtntEL-ICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTP-VH-F 518  Cauliflower m...
CDO75222      468 DDDPFRVQCDAS-NFAIGAELTQ--RQDg---kWR-TIAYLSKALTPAERNYQVWDRELLAVMTSLDEWRHFLIGaRHpF 540 
CAR58026      810 SPYQLTMTVDAS-DNCIGATLEY-KDGRk---pKG-VIAYLSHKLHSYETRWHIRDKELYAIVFALKKWTHYVQG-SH-V 881 
XP_001645961 1039 PQAPTIIYTDAS-LTGAASILLQpENQNgn-tiLY-PIAFYSIRFNPTQQRYSTVERELWAVLHTLEKARLLL---SSnI 1112
XP_004355705 1047 DDSPLLVYTDAS-DVGSGLMIAQ-DDGTg---kLR-PILFDSKKFDQAQRNYDTKDRELLAVVHALDKFDYLLRA-KP-F 1118
Q54AL1        118 FTKSFDVYIDAS-DIGTGCVIMQ-DDGNg---nIR-PILYDSCRFNKFLRNYSTTDREFLALINVLDRHGYMLKD-KK-F 189  Dictyostelium...
KYP65719       22 FRATFDIETDAF-STIVGAILLQs---------gH-PIAYFSKKLCSKLQVASAYARKMYAITESIKKWRQYLIG-HH-F 88  
KIM61736       90 LSKPFTIQTDAS-KLGTGAVLLQ-QDATg---vSH-PCAYLSQALVGAEQNYQVYDLKLLAVICALKAWRPYLISpVEaT 163 
P03355       1021 LTKPFELFVDEKqGYAKGVLTQK-LGPW-----RR-PVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG-QP-L 1091 Moloney murin...
8WUS_E        362 LTKPFELFVDEKqGYAKG-VLTQ-KLg-----pWRrPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG-QP-L 432  Moloney murin...
8R0S_A        519 LIRTNNTHFKSFV---NLnykgDSkL-GRNIRW-QAWLS--HY 554  Cauliflower mosaic virus
CDO75222      541 EIHSDHKNLTYFR---QP----QRlN-PRQARW-VVELQ--NY 572 
CAR58026      882 IIYTDHKTNVNLN---RL----AL-LsPRLARW-AEVLA--NY 913 
XP_001645961 1113 TIYTDNQGIISIGk--TE----RAtH-PRLTKY-LDLLN--TY 1145
XP_004355705 1119 VLYTDHKNMLHFNl--YE----DSgN-GRHIRW-GEFLN--TF 1151
Q54AL1        190 RLFTDHLNLTYYE---EL----KEpT-KRIIRY-LDKAS--EY 221  Dictyostelium discoideum AX4
KYP65719       89 RIFTDQQSLRHMFsqvFQ----TPeK-PDQQKW-AAKLQ--GF 123 
KIM61736      164 VIYTDHQNITYFR---QP----QDlM-AQQMRW-HSILQ--EY 195 
P03355       1092 VILAPHAVEALVKqppDR----WL-SnARMTHYqALLLDtdRV 1129 Moloney murine leukemia virus isolate Shinnick
8WUS_E        433 VILAPHAVEALVK---QPpd-rWLsN-ARMTHY-QALLL--Dt 467  Moloney murine leukemia virus
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