Conserved Protein Domain Family
HTH_48

?
pfam17906: HTH_48 (This model is not part of the current CDD release)
HTH domain in Mos1 transposase
The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.
Statistics
?
PSSM-Id: 523013
Aligned: 69 rows
Threshold Bit Score: 49.4398
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EGT43930  76 KYALRVCILYEslkYQKDKSSvpvFEVFVKFCKVIlVEDVLKYPEFEFW-FYRFINGE 132
EGT55083 137 KNSLRGFLVCL---FTQNNTA---TQAHEKLLVVT-GREVFSLAEVEKF-FEQIRRGD 186
EFP10940   9 PTALHTCIYYE---FLREKDV---EEAYKNFCGTV-GDDVIEYVDFEYW-FYQFYHGN 58 
EFO95563   9 PIALRRLIAYE---ALGKVPV---FQAYKNMCTRI-GDNVMTYPDYEFW-YWRFIQGE 58 
EFP00109  13 PQALRSIILYE---YASGKSV---FEGFKNLCDNI-GDDVIEFNDFDFW-YHQFATGN 62 
EGT43931   9 PIALRHCLLFL---YIRNYPV---DDAYKQFCKTV-GDDVIDEQDVQFW-FNRFRQGV 58 
EGT31793   9 PKFLRHCLLYE---YLQKNTV---EEAFIVFCMMI-ENDIVKKEEFQCYyYNQFEEGI 59 
EGT31783   9 PIALRHCLLYE---FLQGKPI---EESFSDFCDVV-GDNAIKEESFKFW-FDKFEHGL 58 
Q9U3N1   151 RKVLWGYIFFE---CSQSNSI---FEAYEKMCETV-GKNAVKYWEFEYW-YQKIKAGD 200 Caenorhabditis elegans
O62474    29 RTALRACILFN---CLLGTSI---RDAYNQFCRAV-GSDVMEYREYEFW-FYQFKRGD 78  Caenorhabditis elegans
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap