Conserved Protein Domain Family
GerD

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pfam17898: GerD 
Spore germination GerD central core domain
This is the central core domain found in GerD from a thermophilic Bacillus. GerD plays a critical role in nutrient receptor-mediated spore germination in Bacillus species. The crystal structure of GerD reveals this domain as a trimeric superhelical rope fold. Alterations in GerD structure have profound effects on spores' nutrient germination.
Statistics
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PSSM-Id: 496819
Aligned: 84 rows
Threshold Bit Score: 109.547
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_003331689  66 LIMDEMVVKETIKGALTSKEAEDFWKKQFDDPKFAESFAKSMQKEHEKLMKELMKDPDYQKAMIEILKNPEMEKQITDAM 145 Schinkia azotof...
WP_049868854  76 SVQDAESVRMAVKETITSPDYDKVIKKLMTDTRFAGDFAKAVNKENKDIHKELMKDPGYQKELISAMKTPEMDKMILEVL 155 Paenibacillus s...
WP_062490563  73 SVQDQEQVRLAVKEVLVSQDYNTVIQKLMTDPRFAGEFAKAVNKDNKQIHKDLLKDPTYRQALVQVMKAPEMERMILDVL 152 Paenibacillus s...
WP_045670736  73 SVQDKENVRMAVKDVLVSPEYDKVIKQLMTDTRFAGEFAKAVNKQNKEIHKDLLKDPTYQKDLIQVMKNPEMDKMILDVL 152 Paenibacillus b...
WP_068606658  71 TSTDNAQISLAVKEVLTSPEYEKKIEEMMKDPKFAGDFAKTVMKGNKQLHKDLMKDPQYQKSITDLMKDPEIEKMFLDLM 150 Paenibacillus s...
WP_006676526  73 TMQQQEQIRTAVKDTLVSPEYEKVIEEVMKDPKFAGEFAKAVNKENKELHKALIKDPTYQQSFGEMLKSPDMTKAYLEMM 152 Paenibacillus d...
WP_038698959  79 MPQANEQIRMAVKDTITAPEYKKEIEKVMTDPQFAGDFAKAISSQSKQLHLQLIKDPTYQKSVSEIMKSPEMMKMFLDLT 158 Paenibacillus s...
WP_246168779  71 SSASSEEIRTAVKDTITAPEYDKKLEKIMTDPKFAGDFAKAISSQSKELHQQLIKDPTYQKSVTDIMKSPEVTKMFLDLT 150 Paenibacillus a...
WP_052036549  80 LAINEADVSVAMQKALTEPGGHFTLMEQMKNPKFATALAQTFKKDNEQILKELMKDPEYQEMMLTLLKSPEYTQTLYDLM 159 Tumebacillus fl...
KPV44122      71 WLVSQTDVSTAMEKALTSGKNQSLLSQQLKDPKFAAALAKAIEPELLAQQKQLMKDPTYQKDMLVLLKSPDFSKQVEDLM 150
WP_003331689 146 KTQKYRDQMKTVMIETMGSPLFKAKMQDLLIKGA 179 Schinkia azotoformans
WP_049868854 156 MSSQYRKQVMTIMQESMSNPLFRVEILDLLKKAV 189 Paenibacillus sp. D9
WP_062490563 153 QSSQYRAQVMTIMQESLQNPIFRLEMLELLKKAV 186 Paenibacillus sp. 32O-W
WP_045670736 153 QSTQYRKQVMGIMQDTMQNPIFRLEMMDLMKKAV 186 Paenibacillus beijingensis
WP_068606658 151 KGTQYRKQTMAIMQESFQSPLFRMEVLELLDKVV 184 Paenibacillus swuensis
WP_006676526 153 KTPDYRKQMMTLVKDAMGSPLFKLEVMDLLSKVV 186 Paenibacillus dendritiformis
WP_038698959 159 KTSDYRKQTATVMQETMQNPLFRMEVLSLLKTVV 192 Paenibacillus stellifer
WP_246168779 151 KSSDFRKQTMTIMTEAMQNPLFKMEVLGLLKSVV 184 Paenibacillus antarcticus
WP_052036549 160 KTPQYRKQTMDIMTQSLQNPQFRLMYMDLMKQTI 193 Tumebacillus flagellatus
KPV44122     151 QTPPFRGLIMKVMTEALQTPSFRMQFQDALKQAV 184
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