6JOO


Conserved Protein Domain Family
Cas9_Topo

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pfam17894: Cas9_Topo (This model is not part of the current CDD release)
Topo homolgy domain in CRISPR-associated endonuclease Cas9
This is the Topo-homology domain found in Cas9 proteins from Actinobacteria. This domain bears structural similarity to a domain found in topoisomerase II.
Statistics
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PSSM-Id: 523006
Aligned: 13 rows
Threshold Bit Score: 113.619
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6JOO_A        749 FHHARVYKItSG-----K-KPAFAXLRVYTIDLLPYRNQDLFSVELKPQTXSXRQAEKKLRDALATGNAEYLGWLVV 819  synthetic construct
2_pfamImport    1 FHHARIYLCdKInksgkKtGEFYGMIRVFAADLAKSRNDDLLTVPLSESSLSMRYGDPSTVKAIREGHARFVGHLFV 77  
WP_229037998  923 IHHARIFRI-SG-----K-KTTYAMLRVYQCDLVRFQKEDLLTVELPANTISVRTAVPKLREALANGTAEQIGWLVV 992  Schaalia turicensis
EFU60521      991 FHHARLYRIiGP-----KeKVKYALLRVCAIDLCGIDCDDLFEVELKPSSISMRTADAKLKEAMGNGSAKQIGWLVL 1062
1_pfamImport    1 YHHVRLFRVpSG-----K-KYKYCLMQVYTVDLLKFRKEDLFTVELKPQTISVRTCEALLRKALANGTAEYLGWLVS 71  
WP_023018883  115 FHHARIYKVpKK-----T-GYDYCMLRVYNTDLVRHRNEDLFSVELKPQTISVRQAEQKLRTALANGTAEYLGWVVI 185  unclassified Cor...
WP_035106817  917 FHHARVYKItSG-----K-KPTYAMLRVYTTDLTAYRNEDLFSVEIKPQTMSMRQAEPKLRKAIAEGQAEYLGWIVI 987  Corynebacterium ...
Q6NKI3        906 FHHARVYKItSG-----K-KPAFAMLRVYTIDLLPYRNQDLFSVELKPQTMSMRQAEKKLRDALATGNAEYLGWLVV 976  Corynebacterium ...
WP_025253428  913 FHHARIYKItSG-----K-KPVYAMMRVYTVDLLPYRNQDLFTAEIKPQSMTMRQCEPKLRKAIAEGNAEYLGWLVV 983  Corynebacterium ...
WP_006546479  929 IHHARIYRI-AG-----K-KPTYGMVRVFAPDLLRYRNEDLFNVELPPQSVSMRYAEPKVREAIREGKAEYLGWLVV 998  Gleimia coleocanis
WP_040590465  960 FHHARIYRCwTVgkngkK-KIFFGMIRVYQHDLLHAKNEDLFTYPLKRSSVSMRYAKKEVVHAILSGNAEYVGYLCV 1035 Scardovia inopinata
WP_052366666  944 FHHARVYKCaKFnkagkQtGFFYGMIRVFAADLVHAAHEDLLSAELPPQSLSMRYGEKRTVDAILSGHAEFVGHLFI 1020 Bifidobacterium ...
WP_034500968  926 IHHARIYRI-DG-----K-KTTYAMVRVFATDLVKMTHEDVFTTPLKPSTISMRTAEPKIRKALADGTVTQIGWLVE 995  Actinomyces sp. ...
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