6JOO


Conserved Protein Domain Family
Cas9_b_hairpin

?
pfam17893: Cas9_b_hairpin 
CRISPR-associated endonuclease Cas9 beta-hairpin domain
This is beta-hairpin domain found in Cas9 proteins from Actinobacteria. The beta-hairpin domain is not conserved in all type II-C Cas9 proteins. The beta-hairpin in Cas 9 from Streptococcus pyogenes blocks the HNH domain active site.
Statistics
?
PSSM-Id: 496816
Aligned: 10 rows
Threshold Bit Score: 167.178
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6JOO_A        657 GSAHKETIGKLSKVKLSSQLSVSDIDKASSEALWCALTREPGFDPKEGLPANPERHIRVNGTHVYAGDNIGLFPVSAGSI 736  synthetic con...
WP_025253428  821 GSAHEDTIGKLTKLHVGDALSVAMIDRAASEALWCALTRHPDFDPKEGLPADPSRQIRIHGTRLGATDEIGFFPVNAGCI 900  Corynebacteri...
1_pfamImport    1 GAAHEDTIGKLTRLKVGDAISTTDIDRASSEALWCALTRDPDYDPKTGLPENPNRTIRIHGTHLTASDEITVFPVAAASI 80  
WP_035106817  826 GRAHEDTIGELKKIRVGDAISVTDIDRASTEALWCALTRDPDFDPKEGLPENPHRRIRIHGTWYDADDHIEVFPVGAGAI 905  Corynebacteri...
WP_006546479  837 GKAHDDTITKLQMHKVGDAWSLTEIDRASTPALWCALTRQPDFTWKDGLPANEDRTIIVNGTHYGPLDKVGIFGKAAASL 916  Gleimia coleo...
WP_034500968  834 SKVHDDTVRKFIHAKLGEALSVAMIDRAETPALWTALTRLPDFDPKEGLPEDPSREIYIHGRKITADEQLNFFNSPSACL 913  Actinomyces s...
WP_052366666  852 SRAHKDTIHKLVKVRLGDALDAKQINKASTPALYAALTRLPEYNPKNGLPENSDREITVNGKHYAADDDVLFFATDAAQL 931  Bifidobacteri...
2_pfamImport    1 SRAHEDTIHKLLRVRLGDKVEASLVQRASTPALFTALTRCDDFDEKTGLPENRERHIVVNGVHYGSEDEIAFFEKNAAQI 80  
WP_040590465  868 RSAHEDTIHPLKKLPLSHEISAIDINHASTPALYEALVSLPDFSEQDGLPADPSRQINVNGERYSGDDLVSFFNSNAAQI 947  Scardovia ino...
Q6NKI3        814 GSAHKETIGKLSKVKLSSQLSVSDIDKASSEALWCALTREPGFDPKEGLPANPERHIRVNGTHVYAGDNIGLFPVSAGSI 893  Corynebacteri...
6JOO_A        737 ALRGGYAELG 746  synthetic construct
WP_025253428  901 ALNGGYVELG 910  Corynebacterium vitaeruminis
1_pfamImport   81 PIRDGFAKLG 90  
WP_035106817  906 KVRGGYAELS 915  Corynebacterium camporealensis
WP_006546479  917 LVRGGSVDIG 926  Gleimia coleocanis
WP_034500968  914 KVRGGYVEIG 923  Actinomyces sp. S6-Spd3
WP_052366666  932 MVNGGSVEIG 941  Bifidobacterium tsurumiense
2_pfamImport   81 MVHNGSAEIG 90  
WP_040590465  948 AIQGGSAELG 957  Scardovia inopinata
Q6NKI3        894 ALRGGYAELG 903  Corynebacterium diphtheriae NCTC 13129
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap