Conserved Protein Domain Family
RPA43_OB

?
pfam17875: RPA43_OB (This model is not part of the current CDD release)
RPA43 OB domain in RNA Pol I
This is OB domain found in RPA43 proteins (DNA-directed RNA polymerase I subunit RPA43, also known as A43) in yeast. Functional analysis of RNA polymerase I show that, subunits A14 and A43 form the heterodimer A14/43, which is distantly related to Rpb4/7 in Pol II and C17/25 in Pol III. Crystal structure analysis show that A43-A14 heterodimer forms the stalk that provides a platform for initiation factors and interacts with newly synthesized RNA.
Statistics
?
PSSM-Id: 522996
Aligned: 64 rows
Threshold Bit Score: 47.3663
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
OMJ12569     230 PLRGLRLRGVVNIQSQSHIGILVYNIFNASIPRKNIdKAKyMWVEfeepiieevaadseenqlasnkdiagqiaadmaem 309
GAM90756     213 PKRGSYVSGTVRVQNPSWLGLVCWNYFNAGIPRRRL-PPSwTWVEadae------------------------------- 260
XP_013325182 188 PQRGQILEGWVNVQSEGFLGAVVYNLFSVGIERRRL-PADwKWIPpgaedegsidnksknr------------------- 247
XP_002542607 240 PERGQTLQGWINVQSEGFLGAVVLNLFSVGIERKRL-PPDwKWIApgqqptaanqdedehg------------------- 299
PYI05705     177 PQRGQILEGWVNVQSEGFLGAIVLNLFTVGIERKRL-PPSwKWIPpgeeqeeeqqqqss--------------------- 234
XP_056536840 152 PKRGQTLEGWVNVQSEGFLGAVVFNLFSVGIERKRL-PSNwKWVPpgedaetpaltdddsg------------------- 211
RDA90789     114 PRRGYWMEGDIILHAESQIGVVCYGKYNASIEAARL-PPPwKWLSevsdeaknle------------------------- 167
RPB17618     163 PKKGDVLQGWVNLQSASHVGLLVENTWNVSIPKEKI-PESwSYHEleeg------------------------------- 210
RPB25205     158 PQKGDFLEGWVNLQSESHIGLLVLNTFNVSVPRGKI-PRRwSWCEkrvgfapaevkpvee-------------------- 216
EPS43179     163 PVVGMVLEGWVNNVSPSHVGMLYANVFSVAVTSAGI-PEGwKFVPakeneqnseaeadsg-------------------- 221
OMJ12569     310 enkskeksneeeiskeddsskveekadgsddsdesseeeesgeGKGSdekgegseekeegseekteeseekaegseekga 389
GAM90756     261 ----------------------------------------aqpQDDE--------------------------------- 267
XP_013325182 248 ---------------------------sskgatsgeedessnpDFDPekehftplpkpvv----------------hspi 284
XP_002542607 300 ---------------------------egtfdpgsaldeddagRLLNe-------------------------------- 320
PYI05705     235 -----------------------------sstenaqedeegdsDSSTqqknktpfdpekelfrpialasdvnpladtdtn 285
XP_056536840 212 ---------------------------sdkdmadfdtekecfkPTTLsege----------------------------- 235
RDA90789     168 ---------------------------------kttssstaaeIDND--------------------------------- 181
RPB17618     211 ----------------------------------------megMEGV--------------------------------- 217
RPB25205     217 -----------------------------elkdpesmegvegaEGLE--------------------------------- 234
EPS43179     222 -----------------------------egdaarrkgkgdkkDGTE--------------------------------- 239
OMJ12569     390 tatdgenhSKMRSIKHTGQWVNILTNEPVGS----EGYIDFIVSD-VYRVNDVIGISGLMA 445
GAM90756     268 --------AEDAQAGADGYWADENGQKVQGSi--tFRLRDFESAPtTERDRGFVSLEGTML 318
XP_013325182 285 esahpleeNPDDSDSATGYFQSASGYRVRGMi--rFRVRDIDVIPgADPDRGFMSIEGTML 343
XP_002542607 321 --------HDDEVSAAMGYFQTGSGKRIRGTi--eFRVRDVDVIPgSERDKGFISLEGTML 371
PYI05705     286 eggnnntnDEDEDAAAEGYFQSVSGHRVRGTv--rFRVVDVDVIPgSERESGFISIEGTML 344
XP_056536840 236 ----iaidEEEEESSHTGYFQSVSGHRVHGSv--rFRVVDVDVIPgSERDRGFLSIEGTML 290
RDA90789     182 --------DAVEQVDCTGFWVDDRGARVQGKvrfrIRNVFAG----ASQGINYLSLEGTML 230
RPB17618     218 --------EYGNAEIDAGGWMDANGEYVDGLlkfq--------vesVQAIGHIFSMEGSLL 262
RPB25205     235 --------EEEEAEEDLGGWMDEKGEYVDGLlrfk--------vetVKASGHIIAIEGNLL 279
EPS43179     240 --------LIEGLTQAMGRWVNLEGKDVEGIqkfl--------vtgVKTEGGMLSLEGSFK 284
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap