Conserved Protein Domain Family
PriA_3primeBD

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pfam17764: PriA_3primeBD (This model is not part of the current CDD release)
3'DNA-binding domain (3'BD)
This domain represents the N-terminal DNA-binding domain found in the PriA protein. The 3'BD, which has been shown to bind the 3' end of the leading-strand arm of replication fork structures.
Statistics
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PSSM-Id: 522932
Aligned: 287 rows
Threshold Bit Score: 51.7
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
PRJNA29235:CMT41_15075  16 QVAIPVPMRQLFTYQVPEALsspAIKV--GERVVVPFGHR-K-V-IGIVIDEQAQCnfDVSRVKNIAGRLNDNFNLSTPL 90 
EPT34538                19 DVIVPLPIAGLYTYSLPERIg-nNVQA--GCRVIVSFGKK-KfY-TGMVIKVHDIEp-ENCETKQIEEVLDDRPILLPYQ 92 
WP_054558024             6 DILLPIPLERLFTYSIDASD---ATDIqpGMRISVPFGKS-K-IyTGLAIKVHQNPp-TAYEAKPIHQILDTVPMVLPKQ 79  Croce...
WP_048499908             5 QIILPLNLKGTFTYKVPDVY---LDEIevGMRVLVPFRGK-K-IyTGIVTEIHQNAp-EIFIPKEIISILDEFPILPNEQ 78  Chrys...
KYG71937                13 NVALPLPIPQLFTYRVPTEFl-eLVKP--GIRVIVSFGRQ-KvV-TGLVDSIHQEAp-KVYTAKPILDVLDAEPVVTPQQ 86 
WP_009032357            21 DVIIPVPIPKMFTYKIPKNF---RDEIgiGFRVIVQFGKK-KvL-TGVIAKVHQKPp-AAYEAKPILDLLDNHATVNPLQ 94  Indib...
WP_015330264            23 DLILPIPVPRLFTYRVKRDMv-eAIKV--GARVIVPFGKS-R-V-ITAVVAKLHNQppQNYQARYVLELLDEYPLVTGYQ 96  Fibre...
WP_008581846            20 EVIIPLALPLNYTWAIPAHL---KDAArvGCRVEVNLGRSkK-Y-AGIIKKIHHRPp-EFSEVKEIVNVLDAAPVIFYEQ 93  Niabe...
WP_014373731            24 EVVLPLPLAKLYTYSVPFHLk-eWLQK--GVRVEVQLGRQgR-Y-AGLVYSITEEKp--AYQTRPIISVLDDFPVVTEEQ 96  Sapro...
WP_013687480            10 DIILPIPLSQEFTYRVPFEM---NELIqeYLRVIVPFGKGkL-Y-TGIITKIHQEAp-KIYQAKYIEHILDETPLITKKQ 83  Fluvi...
PRJNA29235:CMT41_15075  91 VNFLQLCAHYYHHPIGDVFQQALP 114
EPT34538                93 LTFWNWLSAYYLCTLGEVFKAALP 116
WP_054558024            80 LQHWRWISTYYLCTLGEVFRSAVP 103 Croceitalea dokdonensis
WP_048499908            79 IRFWNWLSEYYLCNLGEIYRFAFP 102 Chryseobacterium koreense
KYG71937                87 VNMMKWMSNYYLCTYGEVVNAAFP 110
WP_009032357            95 IRFWAWMAEYYCCNIGDVMNAALP 118 Indibacter alkaliphilus
WP_015330264            97 LQLFDWMSTYYMCCIGEVLNVALP 120 Fibrella aestuarina
WP_008581846            94 LQLWEWIARYYMCTEGEVMAAALP 117 Niabella soli
WP_014373731            97 FRLWEWMSTYYLCSMGELMAAALP 120 Saprospira grandis
WP_013687480            84 FSFWKWMSEYYMAPIGDVMNAALP 107 Fluviicola taffensis
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