7BL1,5DFZ


Conserved Protein Domain Family
APG6_N

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pfam17675: APG6_N (This model is not part of the current CDD release)
Apg6 coiled-coil region
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway.
Statistics
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PSSM-Id: 522880
Aligned: 111 rows
Threshold Bit Score: 57.2661
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7BL1_EEE     135 PLCEECTDTLLDQLDTQLNVTENECQNYKRCLEILEQmn----------------edDSEQLQMELKELALEEERLIQEL 198 human
XP_003136754  67 PMCEDCTGQLLSGMDQHLKELDEECAQYRELLDSLKEgrda-------------rlmDRNIVAAKLTAMKNEEASLLVES 133
1_pfamImport   1 PVCNECSDALVKEMDVQVATLDDEIKTYKTYIDFLKEnhp---------------ttSISELKTRLKNVTDEEQQLEQQL 65 
Q22592        63 PVCNDCSDALRNEMDAQVATLDDEIKTYQTYINYLKEnhp---------------ttSIPDLKAKLQNVSDEEKELEQQL 127 Caenorhabditis ...
XP_003288170 425 PLCLECTKLTISEIEDETLMLDGEISIYNTYLQRLENqkt---------------neQIEQINGELDELECEEHNLRQFI 489
Q54JI9       503 PLCLECTKLTIGELEDEGSILDGEVSIYSAYLKQLEKgkt---------------eeDLEELGKEMTLLCEEEEQLRLMI 567 Dictyostelium d...
XP_001731451  28 PLCQACARAALQSMEERRLRLEQDHKTLSMLERELQRlaiikgdldmsdddmarwrrEHDRLEHDVDAVHNACKETCAEI 107
XP_002907180 165 PVCKECMDGMVTMIDGQAERARYEKRCFTSYLHNTTNtti--------------hseDIEHIDDKIRFYENELNALEESL 230
XP_002173113 137 PLCSDCAELLTEEMDRQFETMKAEQEVYTEYHKLLCSrtv--------------ddnALLEANEKIQKIQIEIDAKGAEV 202
XP_013024147 144 PLCEECAELLVEEMTKTLNSTKAEKNLYSYYSNMLANqdy--------------edeDISRLEADVQEISGTIKEKEQQL 209
7BL1_EEE     199 EDVEKNRKIVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQTQL 261 human
XP_003136754 134 KKLEAEEAKLDAELKKKKSELYAENESAELLWRVFRDNHRQLIRMEMKEQDLEAEVHCLKSQR 196
1_pfamImport  66 RRLLAEEEQIDQELQQKRRAAETSSADTAQLWMKYRDNLKQVYDDHDELAALEAERQYAEVQH 128
Q22592       128 KKLLAEEEQLDLDLQTKRRTAEAASEKSGELWKKYRDNLRQVFEDQDELHSLEAERQYAEVQH 190 Caenorhabditis elegans
XP_003288170 490 QDTYKEREDVEILTNQLQEKRSQLKSLEDGYWSSFSELHYEAFKNQDEREQTAVQIQWINEHL 552
Q54JI9       568 ENTHQERKEVEQLTLQLQDRIATLKSLEDSYWSCFSEFHYETFRNKDERDQTTVQIQWVNDHL 630 Dictyostelium discoideum
XP_001731451 108 RKTDIEVEQVRYALETLSYMEAKMAKEEQELWYVYHDKAMELERCASSKACLNAEFVHMQKQL 170
XP_002907180 231 ELMESEREAIAQQQEAMHEEEKALIYEEAGLWGQFNGLQLQETVFQEIRDAGTAQIDAMERKV 293
XP_002173113 203 DALKTEEESLLQQLKQAEEEESQLIEENAGFWQDFNNSQLELANLQQSNDSIHMRFEMLSTSM 265
XP_013024147 210 IDLESQEQELQSQFRAITIDCEKVDIEEDEYKKAFNQLQMKESALEKQYDCAKLEFEHNSKKF 272
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