Conserved Protein Domain Family
RACo_linker

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pfam17650: RACo_linker 
RACo linker region
This family includes reductive activator of CoFeSP (RACo) proteins. Structure analysis of RACo indicate that it contains 4 regions: N-terminal region pfam00111 (residues 3-94) binding the [2Fe-2S] cluster, a linker region (residues 95-125), the middle region (residues 126-206), and the large C-terminal domain pfam14574 (residues 207-630). This entry pertains to the linker region. The linker region is only present in RACE (reductive activases for corrinoid enzymes) protein sequences with the N-terminal [2Fe-2S] cluster family pfam00111 and is absent in the RamA-like RACE proteins, suggesting that the linker domain and the N-terminal domain form one functional unit.
Statistics
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PSSM-Id: 496618
Aligned: 170 rows
Threshold Bit Score: 59.0679
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012176513 120 QLKDQGLFVPPVEKKYLELPPPDAGENVPDVTRLVNVLRLKH----DehrLEFLLPVIRLIPDVIREQDFKVTVTLvrPV 195 Desulfosudis ol...
EHQ58011     122 AEHRDIQLNTATRLYFVTLPESTLEDARGESKLLLEALSEDWel-tD---LTIETSELIRLQTALASGDRGVTVAV--FE 195
WP_009759762 123 AEAKAIKADSPIRLVTVTLEEPDMETPRGDADRLREAVATACgv-aN---LTIDPALLPRIQTILRQGKWTVTAAL--HE 196 Roseibium sp. T...
WP_055118774 123 AEAKHIDADSAVTLVTVSIVEPDMETPRGDIDRLREAIAAETgi-gD---LTVDPLLLPRVQTILRSGKWTVTAAV--YV 196 Roseibium album
WP_053820655 120 NAAQTYSISSSISLIDCTLDEATLDENPSASENLIAQLTKQGv---K---ANIDFNLLRDLQPLIHECKGNLTVAV--RD 191 Candidatus Pseu...
WP_014808751 121 ARDIHIDWNPAVKQYHVQVVPPTFEEPAGDFERICAELERNYgl-kD---LNIDWPTLRKLPRRQRDGNWGVTVAV--WM 194 Desulfomonile t...
WP_066921707 125 AGERECALAPAIRKYFVEIELATVGESRGDWDRLQEELCVRFgldrN---LAVDPLALRTLAEALRGGRGRLTVTV--WQ 199 Steroidobacter ...
GAK49017     104 TEHEERPLKPDVSKRFLILPQRTEEHQSSDFEDVHEQIG--Vt--------EIDIAALRHLPSVLFESRREMTVVC--WK 171
BAM01309     110 ATERIIEIDPALRQYYVVVDEAALGEHRGDWGRLQDALQRAAgl-tD---LTIDLHALRKLQPALREGKRGVTVVV--WN 183
EPJ44578     130 AGELTTSIKPSVQLYSLQVPEPSMQQPASDMRLLQQQLQQIHevs----vqGSDLSAIQQLQRALAKGGREVTVAV--Y- 202
WP_012176513 196 REDggktQVINIQPGDTTA 214 Desulfosudis oleivorans
EHQ58011     196 SRK-----VIGIWSGLFEA 209
WP_009759762 197 DGDha-aSISALWPGEKRG 214 Roseibium sp. TrichSKD4
WP_055118774 197 DASiq-pTVTALWPGKKNA 214 Roseibium album
WP_053820655 192 SS-----QIVAAYPKGTHQ 205 Candidatus Pseudothioglobus singularis
WP_014808751 195 DKE-----IVRVLPGKVED 208 Desulfomonile tiedjei
WP_066921707 200 GR-----EAIRFEPGFSER 213 Steroidobacter denitrificans
GAK49017     172 NT------VIGVEPGYTCE 184
BAM01309     184 DHE-----VIDVRPGYQEG 197
EPJ44578     203 VDTdpsaDIIAVWPGVQTR 221
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