Conserved Protein Domain Family
TssC

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pfam17541: TssC 
Type VI secretion system, TssC, VipB
T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. VipB is a family of Gram-negative type VI secretion system components of the tail sheath. They have been known as COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell. VipA and VipB (TssB and TssC) proteins were shown to form a cog-wheel like tubular structure in V. cholerae that was noticed to resemble T4 phage gp18 polysheath. Two beta-strands of VipA and four beta-strands of VipB intertwine forming the middle layer of the sheath. The sheath assembles around an inner Hcp tube and is attached to a structure called a baseplate that spans the bacterial membranes. Importantly, VipA/VipB sheath was shown to form a long contractile organelle in V. cholerae and in E. coli, suggesting that sheath contraction powers the secretion.
Statistics
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PSSM-Id: 496604
Aligned: 13 rows
Threshold Bit Score: 756.537
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_008585742  30 LDAHLDALARLGGFDLLESAIDNVQNLNPERKARKKIFLDEAAKKEERNELKKTLSWWIDVLGKTDELGEMVQDCEHQAA 109 Niabella soli
WP_015813037  23 LETGLPQLAKYGSFDLVETIIEGAANINPEKKARKKIFLTEADKKKERQQLKKRLELWSELLSSAESVPDMIEAGQKQAD 102 Dyadobacter fer...
KGN81823      18 SEGRVNPLAKMGGFSFVESVIDGIANMNPERKARKQIFLKDENKAPERAELLKKIELWIALLESNESVDAMIDSCKEKAT 97 
WP_021584844  28 AASSLDKLKEYGGFAFLENIIDGFSNLNPTRKARRNIFLTDEQWSGERKVLANRLSVWLELLRTGESAEKMRDRAKDKAQ 107 Hoylesella pleu...
2_pfamImport   1 IISNTHLLDEYGGFAFLENVIDGLSNMSPNRKARKNIFLNDLQWEGERNNLLNKLDLWITLLKNSDSIESMIASANKKAE 80 
WP_227625846  30 LTESIHELSRFGGFNFLESSVDGIQNLNPERKARKKIFLTDEQKASERDHLKNNIDLWIELLSNSNSVTEMLETSKTKGA 109 Geofilum rubicu...
WP_036873447  33 LDVALAALSKYGGFSFLESAIDGIQNLNPERKARKKMFLLEEQKENERKDLAEKIDLWLGLLTDNKDIPQIVEQCQTKAT 112 Porphyromonas m...
WP_009127045  30 LKENLGKLSRFGGFSFLESAIDRVQNLNPDRKARMSIYLKDEDKKEDRRNLLRTLDLWIDMLEENSTIDDMLSACSSEVN 109 Bacteroidaceae
WP_068591991  21 LKEKSDELAKYGGFDLLEASIEGVQNMNPDRKARKKIFLTENNKKEGRDTLKKTLEIWSSILSSSDSISEMVEESEKRSK 100 Cochleicola gel...
WP_056067939  24 LEQNVESFIQYGGFDLLEGAIEGVQNLNPERKARKNIFLSESSKKAERQALKTVLKLWAESLKTTDNLLDLVSESAKKSD 103 Flavobacterium
WP_066318824  11 IEGVETPKSNVIDFDFLEMIIPELSSIRPSQKKIKANFLNSIANKASREDLLVILDLWEEALESNKSVSEVLNYISGRMT 90  Aquimarina aggr...
WP_042506825  20 IQEKSNALTKYGGFDLLESAIDNVQNLNPERKARRKIFLTENNKKQERSDLLKVLKLWSETLKSDGDLIDIIEKTDEKAE 99  Algibacter
1_pfamImport   1 IKEKSDNLAKYGGFDLLESAIDDVQNLNPDRKARRKMFLTENNKKQERESLLKILSLWSDTLKSGDDIIGLVQAADDKAQ 80 
WP_008585742 110 IADNTLKSNLKKALDRTRELERSYRSVASFFKNTESQKVKNISVMNAELDQLKDLDNTRFIDHIQAELVNNYDRLDLRNN 189 Niabella soli
WP_015813037 103 SAFELLKENLGKAVEQVRPLEQSYRSVAMFFKNTEQDKVKNVTFLNAAPDQLQDLDVTTFIDAVGEELASKYDRLDLREN 182 Dyadobacter fer...
KGN81823      98 GAVQTLKKNLKNTLKQTRDFEVSYRTVAQFYKNTELDKVDNVSIMNASLEQLTDLNNPVFINHVASELSMYYDRLDLRDN 177
WP_021584844 108 SVEDLLYKNLHTALNRVHDLETAYRSVALFYKNTESSKVKNVTIVNADMAQLKDLDNTLFIDYIGNELSQNFDRLDLRRN 187 Hoylesella pleu...
2_pfamImport  81 LAKKTLNTNLKYALETTKELETSYRSVALFYKNTESDKIKNVTIVNADLSQLKDLDNTLFFDYISNELKQNFDRLDLRKN 160
WP_227625846 110 SVTGKLQENQLKAINSVRDLEKSYRAVMLFYKNTELDKLSNLTIVNAAPEQITDLDNSRFIDFVAAELKQNFDKLDLRMN 189 Geofilum rubicu...
WP_036873447 113 AVSELLAKNQLTAIETVKDLERSYRAVQLFYKNTESDKLTNITIVNASPEQLTDLDNSRFIDFVAGELKQNYDRLDLRNN 192 Porphyromonas m...
WP_009127045 110 EVSNLLATNQLVAAETVKDLERAYREVKSFYDNTGQDKITNISIMNASLEQVTDLDNPIFIDAVAEELKQYYDKLDLRDN 189 Bacteroidaceae
WP_068591991 101 SAGVTLNKNLGKAINETRDLERSYRSMALFYKNTESDKIKNISIVNAELEQLKDLDNTRFIDAISSELNATYDRLDLREN 180 Cochleicola gel...
WP_056067939 104 IAEQTLKKNLAIAVAESKELEENYRTLSLFYKNTEESKVKNVSIMNAELDQLKDLDNSRFIDNIQEELVNGFDRLDLRQN 183 Flavobacterium
WP_066318824  91 DVSVNYNKNLEITATSIRDLEKSYTSTALFYDNAKEKEVHNLTILNADLDQIKDLDDTSYFEAVENEINSAYDRLDLREN 170 Aquimarina aggr...
WP_042506825 100 HSKAVLKKNLKIALDETRELEASYRSVALFYKNTDEASIKNATIVNAEMDQLSDLDNTRFFDYIREEIVSSYDRLDLRDN 179 Algibacter
1_pfamImport  81 ESQKTYTKNIKTALEETRELETSYRSVALFYKNTDLPSLKNVTVVNAELDQLTDLDNTRFFDYIREELVSKYDRLDLREN 160
WP_008585742 190 YSILVLPGYLGSNKVVEKWAKIAHDNKVMLVTDFENLDTPDDVMELFEAANLTGGDPYRSNVMMACNWLVGRGKVDAVGE 269 Niabella soli
WP_015813037 183 YSILNVPGYLGSGKVVDKWAKMAHKNKVMLLTDFMHLDAPEDVMELFESANLTGGSAHLSNVMMTCNWLVGRAKHDDLGE 262 Dyadobacter fer...
KGN81823     178 YSILVIPGYLGSNKVVEKWAKICNENKVMLVTDFVDLDKSDDVVDLFHAANLTGGELHRSNVIMTCNWLVGRGRAKDVDE 257
WP_021584844 188 YSILIIPGYLGSNAVLDKWAKLAHNNKVMLVTDFQDLETPDDVVDIFFNADHTGGDVYKSNVIMTCNYLLGRPRVAEVGE 267 Hoylesella pleu...
2_pfamImport 161 YSILSIPGYLGSNAILDKWSKIAHENKAVLLTDFQDLETPDDVIDIFFNANHTGGDVYKSNTIMTCNYLLGRNRVDEVEE 240
WP_227625846 190 YSILAIPGYMGSNKVVEKWSKIAHDNKVMLFTDFADLDKPDDVVEMFFLSNLAGGDTFKSNTTMACNWLIGRGAYKELGE 269 Geofilum rubicu...
WP_036873447 193 YSLLVVPGYLGSNKVVEKWAKIANANKVMLFTDFADLEKPDDVVDMFFTSNLSGGDTFKANTVMCCNWLVGRGAYKEIGE 272 Porphyromonas m...
WP_009127045 190 YSLLVVPGFLGSNKVVEKWAKIAYSNKVFLFSDFADLEKPDDVIEMFYESNMSGGDGFKSNTSLVCNWLIGRAKYAELGE 269 Bacteroidaceae
WP_068591991 181 YGILVIPGYLGSNKVVEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFEAANLTGGDKYRSNVIMGCNWLVGRGKHDEVGE 260 Cochleicola gel...
WP_056067939 184 YSLLVIPGYLGSNKVIEKWAKIAYDNKVMLITDFQHLDEPDDVMEMFESANLTGGDTYRSNVMMACNWLVGRGKHDEIEE 263 Flavobacterium
WP_066318824 171 YSLLVIPGYLGDNKVLEKWSGMVHNNKVLLITDFEHLDTPDDIVEFFESANHIKSDVFLSNTIMTCNWLVGRSKYDNINE 250 Aquimarina aggr...
WP_042506825 180 YALLVLPGYLGSKAVVDKWAKMAHSNKVTMVTDFAHLDEPDDVMELFESANLASGDAYLSNTIMTCNWLVGRNKETELGE 259 Algibacter
1_pfamImport 161 YSLMVLPGYLGSKSVVDKWAKLAHENKVTLVTDFAHLDEPDDVMEMFESANLASGDAYLSNTIMTCNWLVGRGKYDEVGE 240
WP_008585742 270 EDHLYIPPSSSLAGKVYYTLMSQVTAGKKYGTMNEVDGVKFDLKKSEIAGLEKLGLIPMAKEYGKVMAFSAKTLFNGDNI 349 Niabella soli
WP_015813037 263 EDDLYIPPSTALAGNVYKTLMSQVAAGKKHGTLSEVDGVRFPLKKSEIADLEKMGLIPMVNEYSKVMAFSAKTLFNGDNV 342 Dyadobacter fer...
KGN81823     258 EEDLYLPPSTSLAGKIHKTLMSQVSAGKKHGGINEVDAVHFDLKKSEISQLEKMGLVPMVREYGKVMAFSAKTLFTGDNI 337
WP_021584844 268 EENLYVPGSGALAGKIYSTLMSQVVAGKKFGSLNEVESVRFDLKKSEISELERMGLVPMVNEYSKVMAFSAKTLFNGDNL 347 Hoylesella pleu...
2_pfamImport 241 DEHLYVPPSTALAGKLYKTLMSQVVAGKKFGGLNEVESVRFDLKKSEISELEKMGLVPMVNEYSKIMAFSAKTLFNGDNL 320
WP_227625846 270 EDDLRVSPSAALAGKVHKTLMSQVTAGKKYGGINEVDGVVFQLKKSEISQLEKMGLIPMVNEYGKVMAFSAKTLFNGDNL 349 Geofilum rubicu...
WP_036873447 273 SDDLHVSPASALAGKVYRTLMSQVTAGKKYGGLNEVDAVTFPLKKSEISQLDAMGLVPMVNEYGKVMAFSAKTLFNGDNL 352 Porphyromonas m...
WP_009127045 270 EEDLHISPSSALSGKVYSSLMSQITAGKKYGALDGVDAVVFPLKKSEISKLEKMGLIPLVNEYKKVMAFSGKSLFNGDNL 349 Bacteroidaceae
WP_068591991 261 EDDLFVPPSGALAGKIYNTLMSQVTAGKKFGGLNEVDGVRFDLKKSEIAQLEKMGLVPMVNEYGKVMAFSAKTLFNGDNL 340 Cochleicola gel...
WP_056067939 264 DDHLFIPPSTALAGKVYNTLMSQVTAGKKYGGINEVDGVKFDLKKSEIANLENLGLIPMVNEYGKVMAFSGKTLFNGDNL 343 Flavobacterium
WP_066318824 251 SDDLYIPPSTSLAGKIYSAQISQASAGNKFGVLNRVDGVRFALKKNDLAVLERLGLIPMFYENGEIIAFSAKTLFNGDNL 330 Aquimarina aggr...
WP_042506825 260 EEDVFVPPSGALAGSMYKTLMSQVTAGKKHGGLSEVESVRFDLKKSEIATLESLGLVPMVNEYGKVMAFSAKTLFNGDNI 339 Algibacter
1_pfamImport 241 EEDVHVPPSGALAGKIYKTLMSQVTAGKKHGGLSEVDGVRFDLRKSEIANLENLGLVPMVNEYGKVMAFSAKTLFNGDNL 320
WP_008585742 350 GLQTYSVVRVFDYVAKVMMDFLNRRAFENFNANTRKELNSQIVKFLDGITGPSKLIENFTIKRFEQDPVQKDRIHLDIHL 429 Niabella soli
WP_015813037 343 GLQTYSVVRVFDYITKVLIDFLNRRAFENFDYNTKNDLKKQIIKFLDSVTGPGKLIEKFSVMRFEQDKNQKDKVYLDIHM 422 Dyadobacter fer...
KGN81823     338 GLQTYSVVRVFDYVTKVLLDFLNRRAFENWTAKSEEDLRKQIVEFLDGIKGAGKLIEKFKIERFEQDRKQKDRVWLDLRL 417
WP_021584844 348 GLQTYSVVRVFDYISKVLFDFLNRRAFENWTTRTEADLRSQIVRFLDSIQGPTRLIEKFKVIRIEQDPKQKDRVLLDIHL 427 Hoylesella pleu...
2_pfamImport 321 GLQTYSVVRVFDHITKVLFDFLNRRAFENWTTRTEADLRSQIIKFLDGIKGPTNLIEKFTVMKIEQDKTQKDRILLDIHI 400
WP_227625846 350 GLQTYSVVRVFDYITKVLFDFLNRRSFENWSTKTERDLRLQIVKFLDGVQGPDRLIEKFKILRFEQDPNQKDRIFLDIHL 429 Geofilum rubicu...
WP_036873447 353 GLQTYSVVRVFDYITKVLFDFLNRRSFENWSGKTERDLRSQIVKFLDEIQGPDRLIERSKIMRLERDPNQKDRIYLDIHI 432 Porphyromonas m...
WP_009127045 350 GLQTYSVVRVFDYVAKVLVDFLNRRAFENWTSKSEKDLRQQMIRFLDSIKGPDRLIEKYSIERFERDPVKKDRIYLDINM 429 Bacteroidaceae
WP_068591991 341 GLQTYSVVRVFDYVTKVLMDFLNRRAFENFNARTRKELMGQIVKFLDGITGPDKLIEDFSIRRFEQDPNQKDRVYLDIHM 420 Cochleicola gel...
WP_056067939 344 GLQTYSVVRVFDYVTKVLMDFLNRRAFENFNAKTRKEILNQIVKFLDNVAGPDKLIEDFEIKRFEQDPNQKDRIFLDIRL 423 Flavobacterium
WP_066318824 331 GLQTYSVVRVFDYVSKVLMDYLNRRTFENFNTQTRREIMNEIVKFLDNNTGPDKLIESFSIKRLERDTEDKRRIHLDVHM 410 Aquimarina aggr...
WP_042506825 340 GLQTYSVVRVFDYISKVLMDFLNRRAFENFNTKTRNEILKQIVKFLDGVTGPDKLIENFDIKRFEQDRDQKDKIHVDIRL 419 Algibacter
1_pfamImport 321 GLQTYSVVRVFDYVTKVLMDFLNRRAFENFDARTRKEIQNQIVRFLDEITGPGKLIENFEIRRFEQDINQKDRIYLDVRL 400
WP_008585742 430 KPYFPAKTFLIKLEGQKGDdpDGVDWMSKYEQ 461 Niabella soli
WP_015813037 423 VPYFPAKNFMIALTGQKGDdlDAAAWAAEYAQ 454 Dyadobacter fermentans
KGN81823     418 TPYFPAKSFIIKLDGHKGD--DGNEWDTEYTQ 447
WP_021584844 428 TPYFPAKSFVIQLEGRKGDapEEANWESQYNQ 459 Hoylesella pleuritidis
2_pfamImport 401 TPYFPAKSFVIQLDGHKGDgpEDAVWHSDYKQ 432
WP_227625846 430 TPYFPAKSFVIKLDGIKGD--DGATWNSDYEQ 459 Geofilum rubicundum
WP_036873447 433 TPYFPAKSFVIKLDGTKGE--DETSWNSEYAQ 462 Porphyromonas macacae
WP_009127045 430 IPFFPAKEFVVKLDGTKGE--DGTSWNSEYEM 459 Bacteroidaceae
WP_068591991 421 KPYFPAKNFMIKMDGQKGD--DGNEWDAEYEQ 450 Cochleicola gelatinilyticus
WP_056067939 424 KPYFPAKNFLIKMDGQKGD--DGNDWDTEYAE 453 Flavobacterium
WP_066318824 411 EPYFPAKNFLIRMDGKVGG--EGNVWESFYFQ 440 Aquimarina aggregata
WP_042506825 420 KPYFPAKNFLITMDGQKGD--EGTEWDTDYAE 449 Algibacter
1_pfamImport 401 KPYFPAKNFLIKMDGQKGD--EGAEWDTDYQQ 430
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