Conserved Protein Domain Family
SdpA

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pfam17418: SdpA 
Sporulation delaying protein SdpA
Spore formation by the bacterium Bacillus subtilis is an elaborate developmental process that is triggered by nutrient limitation. Cells that have entered the pathway to sporulate produce and export a killing factor and a signaling protein that act cooperatively to block sister cells from sporulating and to cause them to lyse. The sporulating cells feed on the nutrients thereby released, which allows them to keep growing rather than to complete morphogenesis. Entry into sporulation is governed by the regulatory protein Spo0A (master regulator of sporulation). Upon Spo0A phosphorylation, it represses the expression of abrB, a negative regulator of skfABCEFGH and sdpAB, leading to the transcriptional activation of sdpAB operon. The production of SdpAB is essential for the SDP toxin. SDP is a 42-amino-acid, ribosomally synthesized AMP which contains a disulfide bond between two cysteine residues located at the N terminus. SDP acts by rapidly collapsing the proton motive force thereby inducing autolysin mediated lysis on neighboring species and non-biofilm producing B. subtilis cells (which do not produce SdpI) to respond by moving away, while autolysis would release nutrients that can be readily used to promote biofilm growth. SdpAB proteins are required to produce SDP from SdpC33-203. This domain family is found in SdpA proteins which are predicted to be a 158-amino-acid proteins suggest to be primarily cytoplasmic.
Statistics
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PSSM-Id: 496564
Aligned: 4 rows
Threshold Bit Score: 219.372
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
MPITM:COCOR_05014  26 PYAKQLHTFLWAPQGWSFFTRNPREEKRTAYVLRG-STWESVLLAPHGRLSNLGGLRRKSRAQLLEIGRLVNGlpEDAWL 104
WP_037791760       42 SKGARQYFNTITPQVWAFFTKNPEGIQIGFYKLDD-GKRKNLLRTPQGNPSNLFGLERTQRAQGPEIAYVEAA--VANWV 118 Streptomyces
WP_044878365       38 ASSEKNVLLKIMPQGWSFFSKSPRDDE---FVVLDpETLELAVQWPNASAANFFGLSRYGRAQGIEAGTLSFQvpHDQWQ 114 Paenibacil...
Q5WLL5             36 SPTVTNKLNAIYYQGWGFYSKETRDPLLYAIPLDG----NDELSWPNNKIRHFFGLNREGRSQGIELGAIISNlkPEDYY 111 Bacillus c...
MPITM:COCOR_05014 105 PCE-ESVEKCLAKLPPGRAV--KNTFPEPTMCGPTAIVLQRLVPWAWAQSPTPVTMPLRVVPLEV 166
WP_037791760      119 ECS-GILERCLAEAAKTPAAkvENRSPVQTVCGDSFITQETVVPWSYRDLVKYDRRTTKIAHLDV 182 Streptomyces
WP_044878365      115 VCS-GDLKGCMQQGERT-VIevVNSTPNPSLCASYLLVQRKPVPWAWASITTPEEQPSQYVEVIV 177 Paenibacillus sp. IHBB 10380
Q5WLL5            112 SCDrKS-EECFQEVDVVMVV--TNKSRHPRICGTWGITYTDPIPWSWGKSKDAINMPSEIAKVEI 173 Bacillus clausii KSM-K16
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