3K6O


Conserved Protein Domain Family
NigD_C

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pfam17415: NigD_C (This model is not part of the current CDD release)
NigD-like C-terminal beta sandwich domain
This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroides species. Proteins in this family are typically between 234 and 260 amino acids in length. These proteins possess an N-terminal lipoprotein attachment site. The family includes NigD a protein found in the Nig operon that encodes a bacteriocin called nigrescin. It has been suggested that NigD may be the immunity protein for nigrescin (NigC) because it is directly downstream. This entry represents the C-terminal beta-sandwich domain of NigD.
Statistics
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PSSM-Id: 522831
Aligned: 46 rows
Threshold Bit Score: 95.4176
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3K6O_A         89 KIIGLNPD--NXDSI-GNXKVQIKDXWPSDD--YLNVRF----XLNFPSPQKPILNLVVNEXIP--WTKDGYAHLELRYN 157 Phocaeicola vu...
CCY02147      122 SV--------ENDSV-GTDPLSFEAGWISSDnrWLNLRLsmktGSSSATEQIRQLVAVSLDSTYmhENGTKEIWLTLRHQ 192
CCY65073      106 VPQITPIEe-VKDGI-KTDPVTFESSWTSRNgkYLNLDLsiktGSVNGDFNTQTIGIICTGVDTd-ANGRHHVSLQLYHD 182
CCY15201       95 TPRTYAHE--------KADPVEAVSAWAGGG--CVNLRLavrtR----NEGTHYFGCIDRGMTSw-PDGRQTLHLGLYHD 159
CDA74985       98 SPNPLRPEs-FKSGV-KTDPVEIQSIWLSGN--YLNMVLlipvK-----EEKHSFHFVDEGVETa-ADGKNVLNLRLYHD 167
2_pfamImport    1 SPVPLSESk-FKE-I-KTDPVAIQSIWRGGN--YLNLILqvkvK-----DQKHGYHFIENKLEN--KDGEQTLYLTLYHD 68 
WP_022276796   99 SISPVDKNn-FSPGEiSTDPLDIQSIWRSGN--YLNLILlplvK-----EGKHIYMAVETELTRh-SDGHQTLSLILHHD 169 Phocaeicola co...
13_pfamImport   1 SMLPKPASa-FTDGV-RTDPLDIQSIWLSGR--YLNMVLlpmaK-----DKSHIYHFVENGLTQr-TEGGNQLELTLYHD 70 
EGJ71076      108 TIKFVENEeqTEDLLeSSDAINIVEAYVVNN--FLNLKYt--yKGGRVDSKEHDISIYATKEISeeTRSSTTLELILTHD 183
WP_022390854  102 NITFVSQKe-QTESF-GNDPLYIISLWPGGG--YLNLRYkieqN-----NDKHQFALLYIQEN---QISPDTIFLELRHK 169 Coprobacter fa...
3K6O_A        158 NNG-SQGRLVPGXVSFKLDDYSPENSELKGIKVLVNPVDGEEKTYIFSY 205 Phocaeicola vulgatus ATCC 8482
CCY02147      193 QNDvPEYYSMSVYVSIPLSDFPA----GSLINLKTYTYDGI-VNRCFLM 236
CCY65073      183 QNGvPEYYSAEAYVSIAVSRLPIVPVEGDEVAVEINTYDGT-ITRTFTF 230
CCY15201      160 QGSdPASFSRTLYVSFDLSPYAASLRAGDTVRVGLPTFEAGTVTRAVVW 208
CDA74985      168 SNNdYAAFTNRAYLSVPLHGYKSQLSVGDSVCFRLNTVKQGQVFRKFAL 216
2_pfamImport   69 RNNdIEGFNRKVYLSVPLWAYAGKLHKGDKIVFNIRTYKEGMTSRIFYF 117
WP_022276796  170 HNGdEEAFTRKTYLSIPLSTYKGKLQEGDSITLTLNTYQEGMTSRSFAY 218 Phocaeicola coprophilus
13_pfamImport  71 QNGdYEAFTRKTYLSIPLWEYGDKLGTGDRIILHIRTYQEGETTREFMI 119
EGJ71076      184 AKDdKGNRNVNGVISFPLDNIQNLINNKNEIKISAKAIIGGVQDYTIQV 232
WP_022390854  170 ADSdNPGYLSKGYAAFSLQKIQDKIPEAKAIKVNANVSNLKQQYFIFNT 218 Coprobacter fastidiosus
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