Conserved Protein Domain Family
LBP_M

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pfam17385: LBP_M 
Lacto-N-biose phosphorylase central domain
The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (EC:2.4.1.211), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by bifidobacteria is important for human health, especially in pediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides.
Statistics
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PSSM-Id: 496542
Aligned: 25 rows
Threshold Bit Score: 300.312
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014759793  440 NVAILNCWGKMRSWMAYTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDDVLEHGVADDIDVIVTGGPVDTAFSGGSV 519 Bifidobacteriu...
WP_015357751  452 KVAVLTCWGRLRSWICSGHMHEQPQLDLNH---VNEALAGLPLDVEYISFDDIREKGIPDDVKIIINCGRLDSAWSGGDN 528 Thermoclostrid...
CDB99194      445 RVAVLTFWGSLRSWTCAGHYHEHPELDLIN---IIEALSGMPFDVEFISFDDLKN-KGLDNYDVVINAGFAGSAWSGGEQ 520
A9KHK4        452 RIAVLHSWGSLRSWTLSGHFHETYMHDLIH---INESLSGLPFDVKFINFEDINQ-GALEEVDVVINAGIMGSAWTGGQA 527 Lachnoclostrid...
WP_013369533  449 KVAILHSWGKLRSWTLSGHFHETYMHDLIH---INEALSGLPVEVQFIDFEDIRQ-GILQDCDVVINAGSAGSAWSGGEY 524 Paenibacillus ...
CDD64634      446 KVAVLHSWGKLRSWTLSGHFHETYMNDLIH---INESLSGLPVDVSFISFEDVKA-GVLKDYDVVINAGYAGSAWSGGDN 521
CDF45196      448 KVAVLHYWGSMRSWSLSGHFHETYMHDLIH---INEALSGLPVEVKFINFEDVKK-GALEDVNVVINAGAAGSAWSGGDA 523
jgi:Oter_1377 457 KVAVLTAWGDLRAWTCSGHF--TPGVELYD---VLESLAGLPLDVQFISFDDVVKAGVPRGVKVIVNCGRAGTAWSGGHY 531
WP_012858194  433 KIGILNSWGKIKSWQSNRTGHATGIKENVSYIGVLEALSGLPYIIEFINFDDIKNSEKLSEFKVLINVGEANTSFSGGEN 512 Streptobacillu...
1_pfamImport    1 KVAVLNAWGKKRSWMTSMVAHAKPYFQTYAYEGVLESLAGLPFTVSFINFDDVSR-GALADVDVLINAGQANTAFSGGDY 79 
WP_014759793  520 WaEEPRLAATLRAWVHGGGALIGVGQPSAQ--QFQGRFFQLADVLGVDEERHQTLSVDKYFPAVTPE----------HFI 587 Bifidobacteriu...
WP_015357751  529 W-KDPEIVAKITEWVAAGGGFIGIAEPTAT--IFSSQYFQLSHILGVDREIGRTLSRNKYKYTLTEK----------HFI 595 Thermoclostrid...
CDB99194      521 W-KDEKVVSLLTEWVNNGGAFIGVNEPSAT--DGYDTFFRMSHVLGVSEDTGARICHGKYSFDV---------------- 581
A9KHK4        528 W-EDQEIIERLTRFVYEGKAFIGVNEPSAL--TGYDTLYRMAHVLGVDMDLGDRVSHGRYSFTE--E------------- 589 Lachnoclostrid...
WP_013369533  525 W-NDNKCVDLLTKWVYEGGTFIGINQPSAV--EGHDSFFRMAHVLGLDEDTGSRVGHGRWAYEA--R------------- 586 Paenibacillus ...
CDD64634      522 W-KDEDVVSKLTEWVYNGGTFIGVDEPSAV--AGYDTYFRMAHVLGIDEDTGARICHGKWQYEV--Q------------- 583
CDF45196      524 W-KDDEVVAALTKWVYEGGTFIGVDEPSAV--EGYDSYFRMAPVLGVDKDIIDRVCHGQWSFEVDEK------------- 587
jgi:Oter_1377 532 W-SDPRVEATLTEWVRKGGALVGIGEPSAL--SQPGRNFRLAQVLGLDRDRGERIANGKYNYVAPAKnargvegvteHFI 608
WP_012858194  513 W-LDPNILNIVREFVAKGNGFIGIGDPSAA--IGNGTYFQLQDVLGVDKEIGNTLQFSRYMEETKNR----------SIV 579 Streptobacillu...
1_pfamImport   80 W-DKPDISARIREFVAGGGGFIGVGQPSACfvEGSGTFFQLSDVLGVDQEVGWTLSTDRYVNVAES-----------HFI 147
WP_014759793  588 TADVhlgegvlqgfldagyrkplsgcgggqaigeLGGIDFGEPI---ADTFPVNEDVTLLRAD-GGQV--QLAVNEYGKG 661 Bifidobacteriu...
WP_015357751  596 TDEV------------------------------KEDTDFGTEV---DNVYAIDGETDVLAEK-GGNV--RIAARKFADG 639 Thermoclostrid...
CDB99194      582 --EN------------------------------NGAVVDGTVLagkNKVYLVDGETKVLAAD-GDMP--TVTTHKFGKG 626
A9KHK4        590 --PV------------------------------EELEFAECGPkakRNIYLTDGLAKVLKEE-NGIP--VMTSYEFGRG 634 Lachnoclostrid...
WP_013369533  587 --DE------------------------------HGLVPEGASItpkNSIYLTDGSAAVVEET-SGMI--ALSTHAFGKG 631 Paenibacillus ...
CDD64634      584 --PV------------------------------DGLMPEGSSIrgrSGLYLTDGNARVVAEA-DGAP--AMTVNDFGKG 628
CDF45196      588 --AA------------------------------AEVMPQGSEVserVKCHLTDGKAVVLAAK-GNNP--LMTKNSFGKG 632
jgi:Oter_1377 609 TADV------------------------------AGALDFAKDV---DGIFVLGGDTQVLAER-AGEKspKLATHAFGKG 654
WP_012858194  580 FEQI------------------------------QGKLSIGNRN---KYIYSTSHNLEILQLNkEFGV--EASINKYGKG 624 Streptobacillu...
1_pfamImport  148 IEGFdaleqrsrgrglkei-nvlevesqlqpgreQALLDIGPGV---GSIIPTGG--QVLQFI-DGSV--DLSVHEYGKG 218
WP_014759793  662 RGVYVSGLPYSAANARLLERALFWASHNEG 691 Bifidobacterium bifidum
WP_015357751  640 RGVYFSGFRFNAQNTRLLFRAILWAMGREE 669 Thermoclostridium stercorarium
CDB99194      627 TGVYMSSFKHGEVNNRTLLNLILTAAGEST 656
A9KHK4        635 RGIYLASYEHSIKNARTLLNIILYAAGESF 664 Lachnoclostridium phytofermentans ISDg
WP_013369533  632 KGIYLPSFEFSWENTRLLLNIIRFAGNELH 661 Paenibacillus polymyxa
CDD64634      629 KGIYMSHYNISLENTRMLFNTILLAGGEAL 658
CDF45196      633 CGIYMSSFSVNNQNTKMLLNLILQAGGEAI 662
jgi:Oter_1377 655 RSVYFSGFKVSHENTRLLHRAIVWAAAQES 684
WP_012858194  625 KGVYLQGLPYSIENTRFIYNIIRYIT---D 651 Streptobacillus moniliformis
1_pfamImport  219 RSVYFAGLPYNSVNSRLLHRAIYWAGHAEE 248
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