Conserved Protein Domain Family
GP88

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pfam17338: GP88 (This model is not part of the current CDD release)
Gene product 88
This family of unknown function is found in Bacteria and phage. These domains for a partial Tim barrel fold.
Statistics
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PSSM-Id: 522811
Aligned: 51 rows
Threshold Bit Score: 83.3632
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
PEL:SAMY_007170   20 WLELE-----------HALPTVPawnpPAQEnlr-rfQL--------LS-----WtskmgtpSFSLPAGai--------- 65 
WP_101184592      10 LLSKKi----------NDTAIIGtlylAAQKni---mHA--------PM-----YgidydktALNLNKV----------- 52  Malaciobact...
YP_009785468      20 HALLTv----------QTAKTVKgedlGYAS------AI-----------------------MYLQPHTl---------- 50 
EMI52465          16 RLLANgd--------sNTKTRKN------VG------YL--------SC-------------GLSMSPHk---------- 44 
8_pfamImport       1 KGFTFs----------TALGATEsnpkLAKGakl-----------gvLS-----K-------PHNLAPGk---------- 37 
WP_197530942       3 YSLIGs----------NTKLAKQ------SGl----eYL--------IA-------------GLSLAPHr---------- 31  Bythopirell...
WP_146590854       1 MNLLRt----------NAKLAKA----GPDN------YL--------VA-------------GLALAPHg---------- 29  Posidoniimo...
DSMZ:Mal15_21880   1 MLLRQ-----------NAKMAKTlvdtATGRp-----YL--------SA-----G-------VTLAPHNl---------- 34 
YP_008051852      32 WAELRes-------vgYRKASAAlltsGAAQqklsknSL--------PS-----F-------GLMLTPErglmaaslrdv 84 
3_pfamImport       1 ALESRaeamasvlydtNRESLKAarsvWAEFreskgfKYdapklftyPAsqaklSkskeftvGLTLQHAa---------- 70 
PEL:SAMY_007170   66 -------tMG--GTCPGanAgQSVVplstlrraarrvseqigapvhfaqaiCQHC-YA-EGGQ-Y-----STASVQYAQL 128
WP_101184592      53 ------------NLCKN--A-TNGC--------------------------VTACiYH--NGLfQnshfsKNKIKQARIK 89  Malaciobact...
YP_009785468      51 --------VSekSLCPH--S-SPAC--------------------------RAAC-LA-GAGM-N-----DLPRQVNART 85 
EMI52465          45 -------sVGigNVCTD--A-SRGC--------------------------VAGC-LN-EQGLaS-----VFETIGHARK 81 
8_pfamImport      38 -------eSGkwNLCSS--A-SPGC--------------------------LIAClNTaGNPI-Y-----LRAKLSARIQ 75 
WP_197530942      32 --------RGpeNVCPE----AGYC--------------------------SAVC-NLwFSGR-T-----VTKPVRNAMI 66  Bythopirell...
WP_146590854      30 --------LSghQVCPA--S-TVGC--------------------------RAAC-NLwFSGQ-R-----VVPAARQRAI 65  Posidoniimo...
DSMZ:Mal15_21880  35 -------sGH--NVCAG--A-SKGC--------------------------AASC-VLwFAGL-R-----GTSTSRNAAT 69 
YP_008051852      85 reafglsgAF--NLCPM--A-SKGC--------------------------AAAC-LS-RSGQ-S-----GMPAQQRAQA 125
3_pfamImport      71 --------VAgvETCPW----RGDC--------------------------ARMCvLD--GGN-G-----RYANTQKGRD 104
PEL:SAMY_007170  129 VRLAFVSEMltsregqGDL-TALFDYAIKNANYYLDGRRgsldpvegWRrargerdcrryFRLHDSGDFFSPG-YL---- 202
WP_101184592      90 RTFKFLLQK-------EQF-FEQLIKEINALKRKAKKHN--------Lkl---------lIQLNKTSDILWEKeSFtyke 144 Malaciobact...
YP_009785468      86 ERTRLFVEDr------DAFmGKLTTQILDLMAVSTQAGKsl------------------aVRLNGTSDILWERiQT---- 137
EMI52465          82 ARTVLWYLA-------REWfLETITTDLERWQRKAKRKGqe-----------------lcARLNMFSDIPWER-Y----- 131
8_pfamImport      76 RTHAFMTMR-------KAY-IALIAFELESLERKAKALN--------MTp---------aWRPNTTSDYPFQSvALtvng 130
WP_197530942      67 NRSQLLTED-------PRRfRQLLDSDLERFANDAKSKR--------IVp---------lFRPNVASDLDWQ-------- 114 Bythopirell...
WP_146590854      66 RDTQWLAEDr------RGF-LAQLHHDIAQHARRADRAL--------LRp---------mVRLNVGSDLDWR-------- 113 Posidoniimo...
DSMZ:Mal15_21880  70 RDTQWLFGHr------RSF-INQLNRDIANHVRRAERDQ--------FVp---------vVRLNVASDLDWTD-VI---- 120
YP_008051852     126 VRTAFLLSH-------PVE-AGLIIG--AEIRTALKRHGqi------------------nLRLNTTSDIRWEL-IA---- 172
3_pfamImport     105 IKTQFLHQY-------PVAfTRLLLEELRGLAAKYDRVL---------------------VRLNVNSDLRWHR-IL---- 151
PEL:SAMY_007170  203 AIWKSVANLNPDVSFWAPSRvWVNE--MLReavnavngpAEHSNLVIRPSAFHINEAAPdareLGVGWaagatTYKDSLK 280
WP_101184592     145 VKYKNIMELFEDVEFFDYTKyNILK--SRK---------KTPKNYTLIYSRAGLHKGKLvdswEELQNylknqISIAIVC 213 Malaciobact...
YP_009785468     138 PMGLNIFDLFGNVRFYDYTK--IPI--HKR---------DVPANVHLTFSLDEENFDQAv--aYLRAG-----QSVAAVV 197
EMI52465         132 ----GIPQRFEDVRFYDYTK-HPRRt------------gAILPNYWVTFSRSETNEK------HALEVlr-rgDNVAAVF 187
8_pfamImport     131 KPHKSLIHYFEGIEAYDYTK-VTKK--ALQwv-----kgALPSNYHITFSKSEVND-------SCVDKvlaagGNVAVVF 195
WP_197530942     115 ----DLARSHPHISFYDYTK-VRSRlaAIRn-------hRWPENYQLTYSVNERSHH------RTIGSylrtgFNVSTVY 176 Bythopirell...
WP_146590854     114 ----EVIERWPEVQFYDYTK-VLSR--FRAyl-----dgKLPPNYALTFSASERSHP------ATLASflrrgGNVAAVF 175 Posidoniimo...
DSMZ:Mal15_21880 121 ERWP-------GVQFYDYTK-IRSR--FASyl-----agELPPNYALTFSRHERHHTATi--aSYLRRg----GNVAQVF 179
YP_008051852     173 PDMVAKL-SQAGVLMYDYTA-WSPR--DRR----------ESSAYSLTYSAKEPSHTSD----EYLRGilangGNVAMPF 234
3_pfamImport     152 PALVDGQ-LFPNVYFYDYTK-NSAVlsg---------wgMVAAHYRAVYSVNESSDI------DKVRAfvargGTAAIVT 214
PEL:SAMY_007170  281 PDGPrvmargGRR------PPYDWdC-----QAYD-SANELASCRE-----A-R-APD------G-------RIGCRACW 328
WP_101184592     214 TNEI------KNRlleqaq------hegfkiLDAE-NFEKGVDTLDns-iqG-S-ILL------H-------EAKKGTNI 264 Malaciobact...
YP_009785468     198 PAEE------KL-------EDGAWfalgdqqVNVVdGDLHDLRFLDp----P-GsLVMlkpkgnH-------IAGTELIQ 252
EMI52465         188 HDPNgk---fVGNrsagqrLPKSWrG-----FPVIdGDITDLRFEDdrgqtRgRvVGLrlka-------hdnATRANIIK 252
8_pfamImport     196 EKVL--------P------ATyk-------gVTVIdGDESDVRFMDk----P-G-VIVglk-akGea----kADASGFVV 243
WP_197530942     177 DTDYfpavgrIDP------LPESWrFdgkewPVID-GDKHDIRLKEvdg----tgVVVglr-fkGsrrlldqAIDRGFVY 244 Bythopirell...
WP_146590854     176 AVDYyp---aCGRigplprSVRYWgAe----WPVIdADKHDIRLPSvdg----rgVVCglr-lkGtnaakarGRATGFAA 243 Posidoniimo...
DSMZ:Mal15_21880 180 DVEY------NPQ------------------CGRVgGAPRNGP--------H-S-WPTmagd------rwgqARHSSTVD 219
YP_008051852     235 TTAR------GEA------LPATWqGf----TVID-GDKSDERRNDp----R-G-VVVglr-akGhew--krDNSAGFIR 288
3_pfamImport     215 TRNK------NTP------PPSTFmG-----LPVLdGDATDNRYDE-----R-GaWIDlaakgkAra----lIGKSEFIR 267
PEL:SAMY_007170  329 TY 330
WP_101184592     265 NK 266 Malaciobacter halophilus
YP_009785468     253 RG 254
EMI52465         253 SG 254
8_pfamImport     244 RE 245
WP_197530942     245 AT 246 Bythopirellula polymerisocia
WP_146590854     244 PC 245 Posidoniimonas polymericola
DSMZ:Mal15_21880 220 RR 221
YP_008051852     289 SA 290
3_pfamImport     268 AI 269
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