Conserved Protein Domain Family
Arm-DNA-bind_5

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pfam17293: Arm-DNA-bind_5 
Arm DNA-binding domain
This domain is the N-terminal Arm DNA-binding domain found in various tyrosine recombinases.
Statistics
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PSSM-Id: 496481
Aligned: 118 rows
Threshold Bit Score: 31.9746
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015264269   7 FTLRKDLINK------RGEMPISLIIALNGQKRKISTGISIIPELWSeaarnimpltlkqRNQL------EKTHGD--LV 72  Echinicola viet...
WP_014224121  12 VRLRKSAYRNewy-lyIESYPVYTAGKSEPQRVREYLNRIVTTVVWDktrtar-ttssskSYKP------KRDLNG--VI 81  Tannerella fors...
CDB05869      12 VKLRKSVHHDnewylfIESYPVYKKGDNKPSRVVESVNRTISTPQWDmssiarvlpdgsfNYKP------KRDVNG--II 83 
CDD33689      12 AKLRKSNYKDewy-liIESYPVYKRGSKRASRVVESINRTISTPIWDkssiarilpdgtfNYKP------KRDLNG--II 82 
WP_021980285  12 VKLRKSEYRDewy-lyVESYPVFQSGKDTPQRVREYLNRTITTPVWDksrnartnadgktTYKP------KRDLNG--II 82  Bacteroidales
CCZ11182      12 VILRKSEYKEqws-llIESFPVFEPGKDKPLRKHEPLGRFITTPIFDknssgrtladgkaYYRP------KRDANG--II 82 
WP_021988216   6 VMIDKQKMTR------EGVCPIVIKILHNKGRRVIQLPQRIMFEQWDl-----------kRSMInekfgtPEQRRE--WQ 66  uncultured Cult...
WP_022047178   5 KVKFRKSTVA------GKPGSIYYQLCHNGEVKLLAAKIHLYPEYWDt-----------dNDCia----eTVQNETamLG 63  Odoribacter laneus
CDA76780      16 KLKFRPSTVK------GAEGTLYYQVIYQRNVRRMSSDYHIFPEEWDn-----------eREDIli---aTNSERKyhLL 75 
CDD00031       5 KLKFRTSSKD------EKEGTLYYQVIHKRNVRWITTRHRIRASEWNr-----------rTASItf---tGNRERDcqLR 64 
WP_015264269  73 PPKAVLIKYESELNELKFKIQKIEE-EfrfsgvpySASKIV 112 Echinicola vietnamensis
WP_014224121  82 QCKSEVDQEACIYADEVRKLRQREY----------DNADLY 112 Tannerella forsythia
CDB05869      84 QCKSRIDQEACIYADNVRKLRQHEY----------DNAALY 114
CDD33689      83 QCRSTIDQEACIYADNVRKLRQREY----------DSAILY 113
WP_021980285  83 QCKSQLDQESCIYADKVRSLRQKEY----------DNAALY 113 Bacteroidales
CCZ11182      83 LCRSQKDQEACIFADKVRDLRQHEY----------DNQSLY 113
WP_021988216  67 RINYSIECEIMKLKKIILDCEASGInY--------SVEDIF 99  uncultured Culturomica sp.
WP_022047178  64 ERRIKIDSDLSRLKHIISDFDGRGIkY--------RITDII 96  Odoribacter laneus
CDA76780      76 NIRLSAHKELSRYKEIAEKMNNEGIdY--------TIDDMC 108
CDD00031      65 LIQSSVIWEMEQRKRIIRQMETETKdY--------TIEMLF 97 
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