2XR1,2YCB


Conserved Protein Domain Family
KH_TffA

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pfam17214: KH_TffA (This model is not part of the current CDD release)
Transcription termination factor FttA, KH domain
This entry represents the KH domain found at the N terminus of transcription termination factor FttA and similar archaeal proteins. FttA is a single-stranded endoribonuclease (endoRNase) that mediates cleavage at the RNA exit channel of RNA polymerase (RNAP); the 5'-3' exonuclease activity of this protein degrades the nascent RNA released from RNAP. It terminates transcription on the whole genome, a process that is linked to FttA-mediated RNA cleavage and does not require NTP hydrolyzis. It also has weak activity 5'-3' exodeoxyribonuclease activity on ssDNA.
Statistics
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PSSM-Id: 522760
Aligned: 42 rows
Threshold Bit Score: 60.2553
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XR1_A         7 EDVLLDLKHKIEKNLPAGVTITDVEFEGPQLVLYTEEPRKFAdDGNIIRNLAKELRTRIAMRPDPRVL 74  Methanosarcina mazei
WP_012939844   2 MDKIKEIKQKVIESLPKKVKVKDVEFEGPFLVVYVKNPQELA-NADIVKKLAKDLRKRIIIRADPKSL 68  Archaeoglobus profundus
O29768         2 TKYLDEIREKVKEYLPPKVRVKSIEFEGPQLVIYVENPQELAeV-DIVKKLAKDLRKRIIIRADPKSL 68  Archaeoglobus fulgidus
WP_015591232   4 DEYLSELKRKVAASLP-SVRVKNVEFEGPVLVIYVENPQELAeSGDVIKKLAKDLRKRILIRPDPKSL 70  Archaeoglobus sulfaticallidus
WP_013683837   3 IDRLKELRERVVNSLPRGVRVKNIDFEGPVLVIYVENPQELAeSGDIVKRLAKDLRKRIIIRPDPKSL 70  Archaeoglobus veneficus
WP_015285810   4 EERLKELKDKINEKVPRGINVTQVEFEGPELVIYTDDPKRFAdEADLIRILARDLRKRIVVRPT--IL 69  Methanoregula formicica
Q2FR65         4 EERLKEIQEKIKKKVPKGIKVSSVEFEGPELVIYTDDPKTFAdQDDLIKILARDIRKRIVVRPT--IL 69  Methanospirillum hungatei JF-1
Q8TJB4         4 EDVLLDLKHKIEKNLPAGVTITDVEFEGPQLVLYTEEPRKFAdDGNIIRNLAKELRTRIAMRPDPRVL 71  Methanosarcina acetivorans
WP_015324398   4 DEVLADLKQKIDEKLPKGTTISSVEFEGPQLVMYTENPWSFAdNGNIVRNLAKTLRTRIVVRPDPKVL 71  Methanomethylovorans hollan...
WP_013037221   4 EDILEGLKKKIEKNLPAGTTISNVEFEGPQLVVYTEEPRKFAdNGNIVRTLAKSLRTRIVVRPDPKVL 71  Methanohalophilus mahii
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