Conserved Protein Domain Family
GAPES4

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pfam17157: GAPES4 
Gammaproteobacterial periplasmic sensor domain
GAPES4 (GAmmaproteobacterial PEriplasmic Sensor) domain is a periplasmic sensor domain found in various GGDEF- and EAL-containing proteins. In Escherichia coli, GAPES4 forms the N-terminal domain of the regulatory protein CsrD (YhdA), which contains enzymatically inactive GGDEF and EAL domains and controls CsrD) that controls the degradation of two non-coding RNAs, CsrB and CsrC. In Vibrio cholerae, GAPES4-containing protein MshH inhibits biofilm formation, apparently acting through the glucose-specific enzyme IIA (pfam00358).
Statistics
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PSSM-Id: 496365
Aligned: 15 rows
Threshold Bit Score: 111.241
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_025420729  33 LHQQRLDRQLTAMADSFDRLMLT-EPLPAVAPWLPLAMDSAGITRLELLRRGETVYHLA-LPPGsgRGDPlSDTQRQREL 110 Sodalis praecap...
Q6DAI7        33 YSQLRTEQQLREVTASIDQALLV-QSPENIQYWLPGMMKTAGIVALEIQDNDSPLYSIQ-LPEA--GWER-THLYHEVEF 107 Pectobacterium ...
WP_013315985  33 YSQQRMEHQLRAVAASIDQALLV-QPPDSIQFWLPAVMKAAGIVELEIRDGHESLYLLR-LPEMlsDGADrALLYRHTRL 110 Dickeya dadantii
WP_002210075  33 LCQKKMEQRLQSIVTAYDQSLLL-QPINKKREWLPLMMQTLGVVDVSVKNSTSTLYQLH-IPAVytPWNS-HSRYRQMVL 109 Yersinia pseudo...
WP_273764720  33 LGMEMQQKKVNSLVEIIDKQLEVaDDHQDLTRWLPTLLRSAHVVELEIRQDKQRIYWFRdVQQPt-----dESLLIPYHQ 107 Aeromonas hydro...
Q6LM84        39 LGQNYLTNYLDGVVNVIDQQLADpEGAQAFSRWLPHLLKASNVVELEISSSAGSIYSFKgLHPLs-----dPNVLYISHY 113 Photobacterium ...
Q87LA4        39 LGQEYLTHYLEGIVEVVDKEMEDpDAAYSMQRWMPKMLQASNIVEMTLSTNNAVVYRFKdTSHQi-----eASALFETEY 113 Vibrio parahaem...
Q5E7Z6        39 IGTEYLDHYLTGVVTVVDEELVNpEKAKSMETWLPKLLKASNVVSMDLSSSTGPIYSFQsLAIIp-----dDSLLYHKTL 113 Aliivibrio fisc...
Q32B88        33 AIQYKFSHRVQAVATAIDTHLVS-NDFSALRPQITELMVSADIVRVDLLHGDKQVYTLA-RNGSyrPVGT-SDLFRELSI 109 Shigella dysent...
Q8ZLP2        33 AVQYKYVSRVQATATAIDTHLVT-HDIVSLTPQIDELMIASDIVRVDLLQGERSVYSHS-RARGyrPAGT-SDMYRELVV 109 Salmonella ente...
WP_025420729 111 PLPRHPDYRLVIFYTDTLASD 131 Sodalis praecaptivus
Q6DAI7       108 PLMHHTNMEIALKYVDPLIGL 128 Pectobacterium atrosepticum
WP_013315985 111 SLLHHTDVKVNVTYVDPLFGT 131 Dickeya dadantii
WP_002210075 110 PLLHQPGTEMHFNYIDPLGSY 130 Yersinia pseudotuberculosis complex
WP_273764720 108 PMPHQPGMQADFKLERPFKEF 128 Aeromonas hydrophila
Q6LM84       114 QLEKNTGFNIDIKSLPPYTEF 134 Photobacterium profundum
Q87LA4       114 QLTHNQDYVIRFKAIPPYLGY 134 Vibrio parahaemolyticus
Q5E7Z6       114 PLQINKGYEISFKSVppysaf 134 Aliivibrio fischeri ES114
Q32B88       110 PLIKHPGMSLRLVYQDPMGNY 130 Shigella dysenteriae Sd197
Q8ZLP2       110 PLIKHPGMSLRLAYQDPMGNY 130 Salmonella enterica subsp. enterica serovar Typhimurium
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