Conserved Protein Domain Family
GAPES1
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pfam17155: GAPES1 
Gammaproteobacterial periplasmic sensor domain
GAPES1 (GAmmaproteobacterial PEriplasmic Sensor) domain is a periplasmic sensor domain found in diguanylate cyclases and methyl-accepting chemotaxis proteins, including the diguanylate cyclase DgcJ (YeaJ) that regulates biofilm formation and motility in Escherichia coli.
Links
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Statistics
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PSSM-Id: 319173
Aligned: 4 rows
Threshold Bit Score: 444.295
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q8ZPW4        31 SDRAMNAYMRYIMERADSSFLYDKYQNQSIAAHLMRTFEAPGDPVTAEKHRAFCDAFEAINGTHGVNLTRHNYPALHGTL 110 Salmonella ente...
P76237        31 SDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTL 110 Escherichia col...
WP_002441331  32 ELDNLNKYTRYIAENGKSALFHEEYINQKISLHLSHSFSGKDTSTLTPAR--ICQKQERNGDIYGLNLNDHAFQPLPGTL 109 Shimwellia blattae
WP_012132675  31 SDRAMNAYMGYIIEKADSSFLYDKYQNQSIAAHLMRTFTEPKTPPSDEQQYALCRGFETGRNTHGINLTTHNNPSLHGTL 110 Citrobacter koseri

Q8ZPW4       111 QTAATQCTDNLDDALLLPAFDQAVSINRSQDDHSHGLGTLELKFRYYVDLNKHYVYFYDLINSRRFAMHRWTFLQKG--- 187 Salmonella ente...
P76237       111 QTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYFYEPVNVEYFAMNNWSFLQSG--- 187 Escherichia col...
WP_002441331 110 QTKNPNCNDWAGDVPDLLFFNKKIGSISSKYSFSNYTGYLFNNTRYYIDLKKNYIYINKIFDYRKYIFSNWLIKKRNnid 189 Shimwellia blattae
WP_012132675 111 QTAEANCAIVADDAPLLFAFDQAVAANRNQKDYGKGLGTVEDKFHYYLDIKKRYVYFYNLIDSRQFFMHHWSFLRKG--- 187 Citrobacter koseri

Q8ZPW4       188 ------TMGINRKDIDKLFTGRTVISSIYMDDITQENVMSFLTPVYLAGSLKGIVMVDVNQDNLKNIFYTQDRPLVWRYL 261 Salmonella ente...
P76237       188 ------SIGIDRKDIEKVFTGRTVLSSIYQDQRTKQNVMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFL 261 Escherichia col...
WP_002441331 190 irtsvhTIDIDENALDDLENGESIVSHIYNDGDTQGNIISLLMPVFSSGDIKGIIITDINISDLTTAFYTHDRPFLWKFI 269 Shimwellia blattae
WP_012132675 188 ------TLGINRNDIDGQFTGRTVLSSIYQDDLTEKNVMSFLTPVYLHGKLKGIVMVDINQDNLKNIFYTQDRPLVWRYL 261 Citrobacter koseri

Q8ZPW4       262 NVTLKDMDSGKEIIINQSKNNLFQYVNYSHDIPGGLRVSLSLD 304 Salmonella enterica subsp. enterica serovar Typhimurium
P76237       262 NVTLTDTDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSID 304 Escherichia coli K-12
WP_002441331 270 TLYVKDNHAGKIIDFHQPSLKIFDVSHYQTSITKYYTLHIGID 312 Shimwellia blattae
WP_012132675 262 DATLFDLNSEKKIIVHQSENNLFNYVNYVHDLPGGIRVTLSLD 304 Citrobacter koseri
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