7QCA,7O7Y,7BT6,5XXB


Conserved Protein Domain Family
Ribosomal_L5e

?
pfam17144: Ribosomal_L5e (This model is not part of the current CDD release)
Ribosomal large subunit proteins 60S L5, and 50S L18
This family contains the large 60S ribosomal L5 proteins from Eukaryota and the 50S L18 proteins from Archaea. It has been shown that the amino terminal 93 amino acids of rat Rpl5 are necessary and sufficient to bind 5S rRNA in vitro, suggesting that the entire family has a function in rRNA binding.
Statistics
?
PSSM-Id: 522725
Aligned: 95 rows
Threshold Bit Score: 146.117
Created: 19-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
7QCA_LD0       20 QRFQTKKRRRRLCKTNYRRRTKLIKLDQKNVGEDKSRLVVRITNSKVICQVVKSHLGGDMVVAQATSAELK-EFGLKVGF 98  Spraguea lophi...
XP_001579014   13 SRFQTKFRRRREAKTDYVQRTQLIQQDKTKYGAAKYRLVARITNTKVIAQIVVAELTGDKTVCQALSTELP-KYGIKLGL 91 
10_pfamImport   1 KRMRLPLRRRREGKTDYQQRHNLIRHNKANYGEVKSRFVVRITNTKVICQIVQAYTIGDKVICAADSTELK-KYGITFGL 79 
EJW04197       39 SRFQVKKRRRREGKTDYKQRRKLLTQDNTRYGVYKSRLVVRFTNTKVICAVVRPTYSGDNILCYADSTELK-KYGINFGL 117
KCZ76006       13 SRFQTKLRRRREGKTDYKHRSAMIRQDANKQGAVKNRIVVRITNKKIICQVVKAYVVGDRTIVSADSTELK-KYGINFGL 91 
EED44337       12 KNFKVKLRRRREGKTDYKHRINMLRQDMYKFGSVKSRLVVRITNTKIICSIQKAYADGDRVVAYADSTELK-KFGIHFGL 90 
XP_007604943   12 RNFQTKRRRRREGKTDYQHRTNLLRQDCTQHNNVKSRLVVRITNTKVICAIVKAFIDGDRVVAYADSTELR-NYGVNFGL 90 
Q9AVW3         14 SRFKLKKRRRRIGKTDYKKRMKLIRQDKKKFENKKKRIIIRFSKRNLSLQMVNSNVDGDFILLSSYLKNLS-KLEYK-NL 91  Guillardia theta
XP_003240000   14 SRFQVKWKRRRKGKTDYYSRKKMISKDKRKHNFHKYRVVVRFSKHNIVCQFINSKFEGDHILNSVYSSKLK-KMGIYIGL 92 
XP_001712360   14 SRFQLKWRRRREGKTDYYSRKRLITQDKRKYNSPKYRMVVRITKKNIICQFTQSLLEGDRVLMAGYSNKIGkQLEFFCGP 93 
7QCA_LD0       99 TN-YSAAYATGLLCARKILRMEKLDNI-YKPKFCTDVDV--VEDIeGEKNAYRCYLDIGLSRNSKGAKVFAAMKGASDGG 174 Spraguea lophi...
XP_001579014   92 SN-YPAAYATGLLVARRFLTQMKLADV-FKTEITEEy---lNDe--ENRRPFKVILDVGLARTTTGAKVFAVMKGAVDGG 164
10_pfamImport  80 KN-YSAAYATGFLCARKMLTKLGLAGE-YTGKEEIDGEEylESDNeEGPSAFRCYLDLGLARSSKGAKVFAAMKGACDGG 157
EJW04197      118 TN-SSAAYLTGFLLGQRVLEKFSMKECgFGNNEEL-GDYfvQEENdDGVKPFECFLDIGLKRATNGAKVFLAMKGASDAG 195
KCZ76006       92 TN-YSAAYATGLLLARRMLAKQNLAEE-FPAK-EADGEYsvVECNeEGKKPLTCYLDIGLNRSTKGARVFAAMKGCSDGG 168
EED44337       91 TN-YFAAYATGLLLGRRALAANGMDKE-YSVNEDI-GEYkiTEDAsDERRAYKVFLDIGLARATKGARVFAAMKGASDAG 167
XP_007604943   91 TN-HFAAYATGFLCGRRALQSNGLDRI-YQPNTQI-GEYsiTEDKdDEHKAYKVYLDIGLARASRGANVFIAMKGASDAG 167
Q9AVW3         92 TNnYPFSYLLGYYFGKDLIEKVKQSET-YNKKNy------sSKIT--------AIIDIGLKRATIGNKSFASMKGSVDSG 156 Guillardia theta
XP_003240000   93 TN-FSCAYISGLLLSKNILQKNCLNGS-YCLNAKy-----vI-------KKIRTCLDIGLTRATRGHKVFSCMKGIIDGG 158
XP_001712360   94 TA-FHIAYFCGVYLANRILFKKENKNSeTPNVRKKy------------aKSIFAILDIGLTRATTGHRVFAAMKGALDGG 160
7QCA_LD0      175 IKIPYS 180 Spraguea lophii 42_110
XP_001579014  165 LFIPHN 170
10_pfamImport 158 LHIPHS 163
EJW04197      196 VRVPHS 201
KCZ76006      169 LRVPHS 174
EED44337      168 LYIPHS 173
XP_007604943  168 LQIPHS 173
Q9AVW3        157 INIPHN 162 Guillardia theta
XP_003240000  159 IEIPHK 164
XP_001712360  161 ITIPYN 166
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap