Conserved Protein Domain Family
TFB6

?
pfam17110: TFB6 
Subunit 11 of the general transcription factor TFIIH
TFB6 is a family of fungal proteins that form the 11th subunit of the general transcription factor TFIIH. TFB6 facilitates the dissociation of Ssl2 helicase from TFIIH after the initiation of transcription.
Statistics
?
PSSM-Id: 496333
Aligned: 45 rows
Threshold Bit Score: 120.833
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EPE07944       93 GYKSMGELCADVDVVLNNLWKSGTPNLQIQYLLNIGSELITWMDGFA-PSPRA---TLAILRKLDYCFASLLGGEDLETK 168 
XP_003841141   84 GYSAFWEIASDLGDLVDVVWVSGSPNLQIPYLLNMAVLTMEFLPLFA-SSPRSahaTFRLLSKLDFAFASLLTGRDFATG 162 
XP_007704661   84 GYSAFWEVARDLDGLVDVVWVSASPNLQIPYLLNIAVLTAEFLPLFT-STTRStqaTFRLVSKLDYAFSSLLTGHDLATG 162 
2_pfamImport    1 GYKAFWEVAKDLDGLVDVVWVSGSPNLQIPYLLNLAVLGAEFLPLFA-SSTPStqaTFRLLSKLDYAFSSLLTGHDAATG 79  
XP_008020581   84 GYRAFWEVATDLDGLVDVVWVSGSPNLQIPYLLNMAVLTADFLPLFP-SNTPSaqaTFRLVSKLDYAFSSLLAGHDAATG 162 
XP_054124791   96 GYESFKEVVKDIEEVIDVVWVSGTPSIQIPYLISLAGLVNTYLPEYPhFQPKP---TFRLLKKLDIMFASLLLGEDVESG 172 
XP_002488280   97 GYESFKEVVEDVEDVIDVVWVSGTPSIQIPYLISLAGLVNTYFPDYP-FQPKP---TFRILRKLDIIFASLLVGEDVESG 172 
XP_001540572  100 GYENFREVAKDMETIVDVLWVSGTL------------LLNTYLPDFP-FSARA---TFKLIKKLDTIFASLLLGKDLQTG 163 
XP_012213956   83 GYERFREVAKDIEGIADVLWVSGTPSLQTPYLISIAGLLNTYLPDYP-FSPRS---TFRLVRKLDAMFASLLQGEDVETG 158 
XP_009154813   82 GYTTYDEFVADADPLVDVVWVSGTPTIQIPYLLTLAGLVCSYLQAFP-FSMS----FFYIVAKLDQGFVALLQPS---EN 153 
EPE07944      169 EPLPGFEQGVRRaGMTQTDMVRCRSIAELSRITVVDVFQRGPPDPLdegggtnipqtprssrtqrtpktpttpstfketi 248 
XP_003841141  163 DFLPGFEHG--R-SVSTTEKVRLKGVVDRTRLTVVRTLSGESVVDQg--------------------------------- 206 
XP_007704661  163 ELLPGFENG--R-TVTTTDKVRLKGIVDRTRLTVVRVMSGESVVGD---------------------------------- 205 
2_pfamImport   80 DQLPGFEGG--R-TVTTTDKVRLKGIVDRTRLTVTRVVSKESVVGD---------------------------------- 122 
XP_008020581  163 DLLPGFDGG--R-SMTTTDKVRLKGIVDRTRLTVVRVMSRDSVAGDeqdi-----------------------------g 210 
XP_054124791  173 VPLSGF-EYTKN-IVSMTEKVRIKSIAEASRIVVVDMRERDVEYQDdi-------------------------------- 218 
XP_002488280  173 IPLSGF-EYTKS-IVSVTEKVRIKSIAEASRIAVVEKRVKDDESHG---------------------------------- 216 
XP_001540572  164 NPLPGF-EGKLG-VVSMTEKVRIKSIAESTRIIVVSAQGNEDGEGGv--------------------------------- 208 
XP_012213956  159 QPLPGF-ETRRN-QVSMTEKVRIKSIAESTRITILDTQDQGGPLEF---------------------------------- 202 
XP_009154813  154 GSAPGA---TSH-SVSTTEKVRIKSLVEETRVAAVRAASASGHQANihdi-----------------------------s 200 
EPE07944      249 vdTDtdtetMETdteteTLPGTatrettveledayPEYDNDDsD-MDEDEQMGVGQVYEYTLVKLG 313 
XP_003841141  207 --GGsg-esMMSdtdnqQVGSHqdtv------tfeGFENNEEdEwEDDWEERSVANVYKKTIEELG 263 
XP_007704661  206 --DQdvgeaMDTdngqeVEPRGhdgtv----tfegFENNTDEeEeDDEWEERGIATIYEKTIGELG 265 
2_pfamImport  123 --EDyvgdsMDTdtekeTDASGrqatv----tfegFENNEEDeE-DDEWEERGVASIYEKTIGQLG 181 
XP_008020581  211 gtLDtd-tdMDMdttqeEVGAEhgtv-----afegFEGNTDDeE-DDEWQERGIASVYEKTIGELG 269 
XP_054124791  219 -gDE-----SENewedgMDI-----------------DESDFeTsHAGLWEMEAAKVYERTIQYLG 261 
XP_002488280  217 ---Ged-esENEddwedGMDI----------------DGNGDeSgRTGLWEMEAARVYERTIQYLG 262 
XP_001540572  209 -cMDmd-ddDDDdgdadYDGGQg-----------gRLGFEGFgD-ELGKWEMESGRVYERTIQILG 260 
XP_012213956  203 ---DiededGDGneardDDGDF-------------GTGEFVAdS-GPGRWEMESAKVYERTIQLLG 251 
XP_009154813  201 evDT-----TDEdedqeDND------------------GDDGgDlDSDSISLGIAKVYKRTLEILG 243 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap