Conserved Protein Domain Family
VMR2

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pfam17055: VMR2 
Viral matrix protein M2
Is a viral transmembrane protein which forms a proton-selective ion channel that is needed for the efficient release of the viral genome during virus entry. Once is attached to the cell surface, the virion enters the cells by endocytosis. Acidification of the endosome triggers M2 ion channel activity. Also plays a role in viral proteins secretory pathways. Elevates the intravesicular pH of normally acidic compartments, such as trans-Golgi network. It seems that M2 protein ion channel activity can affect the status of the conformational form of cleaved HA during intracellular transport.
Statistics
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PSSM-Id: 293660
Aligned: 2 rows
Threshold Bit Score: 507.689
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6E0W8   1 MDAPINPSSPTRSSYETALERQWLIKDEPSHHVDLGCHFTLEIKAFSPKMIELLETGSLTLGSVYQGLYNLIKDKDCKGL 80  Maize mosaic virus ma...
Q6E0W8   1 MDAPINPSSPTRSSYETALERQWLIKDEPSHHVDLGCHFTLEIKAFSPKMIELLETGSLTLGSVYQGLYNLIKDKDCKGL 80  Maize mosaic virus ma...
Q6E0W8  81 ELDRDTTHGNKLHVLAAAFLCVLRKYENQVRFYNVKTKDSLTGEIQYMSRVHIGDDNLGLFDPDTYRMIGGSFPEGIYRL 160 Maize mosaic virus ma...
Q6E0W8  81 ELDRDTTHGNKLHVLAAAFLCVLRKYENQVRFYNVKTKDSLTGEIQYMSRVHIGDDNLGLFDPDTYRMIGGSFPEGIYRL 160 Maize mosaic virus ma...
Q6E0W8 161 NLRTQLTPRGEDDGLEIIMGTILTVPVRGPADRQPLGVLMDRQLRQFPVGTNPWSSLGEAKPKGRSLSLLRGILM 235 Maize mosaic virus maize/U...
Q6E0W8 161 NLRTQLTPRGEDDGLEIIMGTILTVPVRGPADRQPLGVLMDRQLRQFPVGTNPWSSLGEAKPKGRSLSLLRGILM 235 Maize mosaic virus maize/U...
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