Conserved Protein Domain Family
tRNA-synt_2_TM

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pfam16995: tRNA-synt_2_TM (This model is not part of the current CDD release)
Transmembrane region of lysyl-tRNA synthetase
tRNA-synt_2_TM is a family from the N-terminal region of tRNA-synthase-2, with 6xTMs. The presence of this region indicates that the protein is anchored in the membrane. The family is found in Actinobacteria.
Statistics
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PSSM-Id: 522677
Aligned: 17 rows
Threshold Bit Score: 157.083
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_249124053   14 VPGAAAGVVFAIALLCSFAAVGLVLHGHVQPVRRFVDDVV--FPAP--PNLAYGAFLAVLAAALKRRKWVAHRILAAIVL 89   Saccharopolys...
D0LB45         53 APKIAGTVVGVLAGIALLSSIFPLFRRLIHYPRDFIDNYI--VSLPn-TSLAWAFVLALVAIALSSRKRIAWWIATIYLV 129  Gordonia bron...
B2HR11         20 VPAAAGWAVGVIATLSLLASISPLVRWIIKVPREFINSYL--FNFPd-TSFAWSFVLALLAAALAARKRIAWLLLLTNVV 96   Mycobacterium...
A0QYV1         21 VPAAAGWTVGVIATLSLIASVSPLVRSLIRVPREFVNDFI--FNFPd-TSFAWAFVLALLAAALAARKRIAWWVLVLYLV 97   Mycolicibacte...
WP_023985934   25 VPTAAGWIVGVIATLSLVASISPFVRAVIRIPREFVNDYI--FNFPd-TSFAWAFVLALLAAALAARKSIAWWILVLYMV 101  Mycobacteriaceae
WP_013137279   37 VPHRSGMAIAAFSVLSFLFSVSPHLRRWAETPRVYLDTYF--FAVPd-TSFAWAFVLGILAAALAERKRLAWLTLLVTLV 113  Segniliparus ...
WP_014442810   18 VAAWWGRIVTIAGIWVLI---SFPLRM--FSWTRWVDYAFslINMPaePNVFIAAVLLLMGSALRRRLRAAYLLLLVYQV 92   Actinoplanes ...
2_pfamImport    4 VPAWVGGFFGLLGTACALTTLISPLRFLLDPVLRVVNEWL----VPasPNLAYAVFLLLLAGALLARKRAAWWVVTFYTA 79  
WP_023545021   28 VPEAFATLFGALGLLCALLALIEPLRRVFRPVARTLDQLL----VPisANLAYAVFLFLLAGAIAARKKVAWWLVVVYLG 103  Streptomyces ...
WP_020943591   28 VPEAFGTLFAFLGLLCALLAFIAPLRTVLRPVVRALDLLL----VPisANLAYAVFLFLLAGATAARKKVAWWLVVVYLG 103  Streptomyces ...
WP_249124053   90 LQLLVDLAVLVAagsegsl--widemgtLRQVPVSPWPFEVNVAVSLAALTLLVWARGEFYGRTSSGSVRRAAATFCGLV 167  Saccharopolys...
D0LB45        130 LFMVSNALLLVDpva-----------tdFGVDTDERIQIWIGLGIDAAALIFLIVTYRQFYTRVRRGALFRALGVLIVGL 198  Gordonia bron...
B2HR11         97 LAAFLNAADIAA----------------GGNTAAQNFGENLGFAVHVVAIVVLVLGYRQFWAKVRRGALFKAAAVLVAGG 160  Mycobacterium...
A0QYV1         98 GAIGWNVGDLAA----------------GGDTVADDIGELIGIAFHVAAIVFLVVARKEFWAKVRRGALLKSAAVLVAGN 161  Mycolicibacte...
WP_023985934  102 SAAALNVADLVT----------------GDETVMEDIGEIVGLVFHLAAIGFLVLARHEFWAKVRRGALIKAVGTLVAGM 165  Mycobacteriaceae
WP_013137279  114 VFSWYNVVQLLD---------------------GERLWPIIGLATHCAAVALLLAAHGEFSTKVRRVAPLRALVALFIGL 172  Segniliparus ...
WP_014442810   93 SATLLNAVLSVIgftywhdpseidlglsRLDILLSA----ASTPIGVVVIVQLWRARAAFPARLARGSRRTSGAVLIGGL 168  Actinoplanes ...
2_pfamImport   80 LLLAAEAITADL---------------------VGVVEAVVSLTITGVVLAVLLVSRSQFPARVRRGAFWRALGVLVLGL 138 
WP_023545021  104 LLVLTDALGLTL---------------------GLYAQSVPSFVLCGLLLLLLVAARKEFYAASRRGALWRAIGVLLAGL 162  Streptomyces ...
WP_020943591  104 LLVVFDVLGLAL---------------------GQYAVSLPSFVLCGLLLLLLVLARAEFYAASRRGAVWRALGVLVAGL 162  Streptomyces ...
WP_249124053  168 AAFVALGFGLVTVFPGSLDDTwERLTWTVERVLGGAVVFD-VTRVG-HAPGWVNLLLGLFGSAALFATLFVLF 238  Saccharopolyspora er...
D0LB45        199 TAATLVGWGLVWAWPGSLERT-ERLPYAFNRVVTFGSIDS-RTFDGhHTHIVIDSALGLLGALALIAAATVLF 269  Gordonia bronchialis...
B2HR11        161 AIGILVSWGLVELFPGSLAPH-DRLPYVANRVIGFALADP-DLFTG-RPHVFLNAMFGLFGALALIAATIVLF 230  Mycobacterium marinum M
A0QYV1        162 LIGIVVAWGLLQAFPGTLDPE-WRLPYAVNRVSGFATVPT-EVFEG-YSHTFLNAIFGLFGALALMAAAIVLF 231  Mycolicibacterium sm...
WP_023985934  166 AVGILIGWGLLELFPGSLEPD-YRLGYAANRVVAFSGVDA-EVFDGqHPGVLVRALLGLFGALALMVAAIVLF 236  Mycobacteriaceae
WP_013137279  173 LVATGLGWALVEAFPHTVPPD-ERLAYTLNRVVIFTAFER-HDFSG-YSYGFVNTLLGLFGAFALIAAIIVLF 242  Segniliparus rotundus
WP_014442810  169 AASWVLAFGLTLLFPDTLRGVgERVIWANRSALGLTVAGSnTGLHGhQGHHWVSVAASTLSALVLLVAVSVfl 241  Actinoplanes missour...
2_pfamImport  139 AVFVLIGWGLTELFPGGLPPG-VRLLWAANRVCG-GLIST-RHFNH-HPPVALGFLLGLFGALALLNAAAVLF 207 
WP_023545021  163 AVAILLGWGLVLLFPGTLPAN-EHLVWAADRVLG-GLFPP-SSFTG-RPPRKVTFLLGLLGALALLNAAAALF 231  Streptomyces roseoch...
WP_020943591  163 VVAIVVGWGLVSLFPGTLPEG-QHLAWAADRVCG-GLVSN-SSFDG-RPPRKVTFLLGLFGALALLNAAAALF 231  Streptomyces collinus
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