Conserved Protein Domain Family
VPS13_mid_rpt

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pfam16910: VPS13_mid_rpt (This model is not part of the current CDD release)
Repeating coiled region of VPS13
This repeat is a family of repeating regions of eukaryotic vacuolar sorting-associated 13 proteins. This repeating region shares a common core element that includes a well-conserved P-x4-P-x13-17-G sequence. The exact function of this repeat is not known.
Statistics
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PSSM-Id: 496200
Aligned: 116 rows
Threshold Bit Score: 134.578
Created: 22-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_020433270   260 FETNPI---SSTYDYRLSLILNTMEVVVNKPQIERLIEFATPEENV-------NLFPLSS-VAMEELILLKEMTIFQLRE 328 
Q54LB8         573 VDTRPP---DKNLDLSVELNMDPLNIIVTKPLIMKVVDFFHDPNLDi--------TNISN-RAGAHLEDIKEQAKMQLQD 640  Dictyosteliu...
XP_020437089   666 PNGSPL-------DYSVAIQSKSLSIVYYPLFVGTIIDFFRFNSSSq-----dTFEDLGK-MAQSTIQNIKTQTHHRLML 732 
XP_004361633   705 RVGEPC-------DYSLNIQSKPLTIVYYPLFVSTISNFFISNSNSi-----dIYEDIER-MASTTINSIKSQTKDRLLM 771 
XP_003293812   647 ESFSPS---DNNVNYKLSIQSKPLTIVYYPKFISTINNFFFKKNEEqdeiindVLEDLEK-KAQETLESFKSQTRDKLML 722 
Q55FG3         679 TSTNSNnnnNIKVNYSLSIQSKPLTIVYYPKFISTVNDFFFKKEDDqdv-qdmVLEDLEK-KAQETIESIKAQTRDKLLL 756  Dictyosteliu...
XP_048230004   425 VDVSP----NREVELSVKVMLQPLEVSYDVEFFLNFMEFFNVLKSI-------EFQQKRVlWSFNEFKDVKTRLLSKSEY 493 
15_pfamImport    1 FVKSPI---GENIDWRLSATISPCHATIWTESYDRVLEFVKRSNAVsptvaleTAAALQM-----KLEEVTRRAQEQLQI 72  
XP_006583973   571 FVHLPI---GENIDWRLSATIAPCHVTVLMESIDRVLEFLKRSKAVsptvaleTATALQM-----KFEKVTRRAQEQFQM 642 
XP_004997869   600 FETNPQ---DKPVDTRVVLGLEPLEVVYVPAVLQRVTDFTAVPAELt------ALDDVAS-AAAARAWQLQDYTSTGLMY 669 
XP_020433270   329 VINHHKTIDLYVDAKAPTVIITE------HAN-RVDTSLIIVDLGSCLMHS-----------DLSQKSA--KVKDSIDRP 388 
Q54LB8         641 AIDNHKVLGLAVNIHAPVIFIPE------DVI-NERSNILIVDLGKLVVRS--------------DTSAfvKGSNKLAGS 699  Dictyosteliu...
XP_020437089   733 AISDRTKISLAMNLEAPIILVPE------VITeNSDSNTLILDLGYLSINH-----------QPKIRNNinNNNNNNNNN 795 
XP_004361633   772 AISNQTRLSLSMELEAPIIVIPD------DIHnNDRSNMIILDLGHLSINH--------------TPTKinNNNNNNNSE 831 
XP_003293812   723 AISNRTTLSIDLNLEAPVVIVPE------SIT-NANTNLLILDLGKLLINH------------SPKLSKlqQQNNNNNTN 783 
Q55FG3         757 AISNKTTFSIDMDLEAPIILVPE------SIT-NKNTNLLILDLGKLLINHypkqqqlqqqlQQLQQEQgqEQEQEQKQE 829  Dictyosteliu...
XP_048230004   494 TLSSQTKLSWDVSILNIIINIPGrdaisgKYN-------LVLELGSLVYTS-----------KHGAESVvaKIQEQSHIF 555 
15_pfamImport   73 VLEEQSRFSLDIDLDAPKVRIPLr----tSGA-SKCSSHFLLDFGNFTLTT-------------------------MDTW 122 
XP_006583973   643 VLEKQSRFAFDIDLDAPKVRVPLr----tSGS-DLCDSHFLLDFGHFTLHT-------------------------AESQ 692 
XP_004997869   670 AIETHTTIDLDIQLGAPTVIIPT------------DRVMMVVDLGHLSVKS-----------SVIDPSTl---------- 716 
XP_020433270   389 llLTEL-E-----TPVKESDLYDHYRATLSSIKVML-ARNDQE---WWRATTngntssgnsnsnsnsSVDVSNGFP--LI 456 
Q54LB8         700 --TSEI-D------------LYDKFNVSFESIQVLL-SDDLKS---AISTGDkkppti----ggvndKQGHPLKHHnsII 756  Dictyosteliu...
XP_020437089   796 nnNNNKdDt----QQSWDEDFYDEYNFQLSNIQVLL-AYQNQD---WRDLEQ------------------V-AKYRmnIA 848 
XP_004361633   832 qqPSEK-----------WEEFYDEYLFKLTNIRLLL-SRQDRD---WKDQSQ------------------V-QKYRmnIA 877 
XP_003293812   784 -------------SKDWEEEFYDEYLFKLVNTQILL-SNLKYD---WKDQKQ------------------V-EKFRmnIA 827 
Q55FG3         830 --QKQEqE-----QKDWKEEFYDEYLFKLINTQVLL-ANLKND---WRDIEQ------------------V-KKFRmnIA 879  Dictyosteliu...
XP_048230004   556 kqFSSStfttnflTDFQIQDLYSYFSVELKNLELKLeIPQQAQ------TLT--------------------------IL 603 
15_pfamImport  123 -------------SEEQRQNLYSRFCISGRDIAAFF-TDCGSDnrgCRLLLEdftnqp----mlspiLEKADNVYS--LI 182 
XP_006583973   693 -------------SDEKR-NLYSRFYISGRDIAAFF-TDCGSDfgsCSMVKSsvdsqv----mnspiAKKDENAYY--LI 751 
XP_004997869   717 ------------sVKNVEEGMYDRFDIRLSHLQAVI-LQRNKGsdmate-------------wqemlVAPDVTPHH--LL 768 
XP_020433270   457 EEMAINLHIQSCIEPNELSLALFKVSGTLPEVKINISDESYLQLYRMSKTLAA 509 
Q54LB8         757 KKFDIQLKIFSSIQQNNLTMTKLKIKGELPKFDFYLSDKKFKQLLTILNAITA 809  Dictyostelium discoideum
XP_020437089   849 NPFNANFQLKLSRIPN-HILTSIKLNANIDLLEFYLSSQQYVNFIGVIQMITS 900 
XP_004361633   878 SPFDANLSLNISKVRN-HLLTSLKLFINIKLLELCLSSLQYVDMIHVIQSITS 929 
XP_003293812   828 NPLNANFSLKISKLQN-QFLTSLKLFISFDAVEFYLSSSQYVDLMNIIQSATS 879 
Q55FG3         880 NPLNANFTLKISKLNNRQLLTSLKLMASIDLLEFYLSSCQYVNLVNIIQSVTQ 932  Dictyostelium discoideum
XP_048230004   604 EKFSASITFASCIISDESILKQLEVYVILPSIAANFSLPIYKSILALIGHLDS 656 
15_pfamImport  183 ERCGMAVIVDQIKVPH-PSFPSTRISIQVPNIGVHFSPTRYMRIMQLSDILYG 234 
XP_006583973   752 DRCGMAVLVNQIKVPH-PSYPSTLISIQVPNLGIHFSSERYFRIMELLSLLYE 803 
XP_004997869   769 APTTLDLAFFQCVQQNNPKYARGKFEGHLPSLHVYISDAIYIQLMELLAVIAP 821 
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