Conserved Protein Domain Family
VPS13_ext_chorein

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pfam16908: VPS13_ext_chorein (This model is not part of the current CDD release)
Vacuolar sorting-associated protein 13, N-terminal
VPS13 is a family of eukaryotic vacuolar sorting-associated 13 proteins that lies just downstream from Chorein_N family, pfam12624. The exact function of this domain is not known.
Statistics
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PSSM-Id: 496198
Aligned: 180 rows
Threshold Bit Score: 58.0431
Created: 22-Aug-2024
Updated: 4-Feb-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002176965   242 WKVKLREKVFRNVEATLQDVHIRCEvsahgldtvyqqhSRpA--------------------T-------AEpSfvqkqp 294 
8_pfamImport     1 RWGRLLAKILDNVQITVKNIHIRYE-------------DE-L--------------------SlddgtgtVP-------- 38  
29_pfamImport    1 WLGSLIATIIGNLKVSISNVHIRYE-------------DStS--------------------N-------PG-------- 32  
1_pfamImport     1 WLGSIIATIIGNLKVSISNVHIRYE-------------DStR--------------------D-------YS-------- 32  
XP_001421282   162 AIAGLIDVALANVLIEISNVHVRIEgey---------------------------------------------------g 190 
XP_003054806   157 WLAGMLDTILGNLEVRVTRIHLRLE-------------DD----------------------LggadgadGAgCaseass 201 
Q4E184         134 FLERLKWVIFRNMKLVVKNFTVRYE----------------L--------------------I-------GT-------- 162  Trypanosoma ...
Q4CU48         163 FAARLKAVILNNVQLMLKDVVVQYEgcyasgggvdagtDQlV--------------------G----------Q------ 206  Trypanosoma ...
XP_001564425   157 FTARLKASILNNIRVEVEDLWVHYTssiag---vtpavDNvLpggvveevatrqlsqrqpqqSmdsspppTAhVntavqq 233 
Q4Q363         157 FTARLKASILNNIRIEVEEVWVHYTscvag---aapggDDvLsggvvgeastleppqgrpqhSmrsrpspSAhIdasvql 233  Leishmania m...
XP_002176965   295 eeRAFALGFTLENLVVRT---ANGQWevgsheiseA-----DGsAMssSKgnlgpnmYAVKNNK--------------IG 352 
8_pfamImport    39 --RPLSAGITLRQLVVQT---VDEQW---------T-----PT-YVqgAGggkagesGGRFVYK--------------LV 84  
29_pfamImport   33 --HPFASGITLARLAAVT---MDEEG---------N-----ET-FDtsGAld--------kLRK--------------SL 70  
1_pfamImport    33 --EILASFFLISTIFALV---I--QG---------TpllraSP-WPssQLlq--------wMKKemrpltqvalwincSL 87  
XP_001421282   191 agVPWGMGLVLERVSLTT---VGEDF-----------------------EndfkvggFADSLRK--------------MI 230 
XP_003054806   202 asNPFAAGVTLESLSVST---VDADG---------------AEsFSvkGLae--------rMRK--------------SA 241 
Q4E184         163 --SPLSATIRLQYLSCIAanaMNE-----------------PF-FV--TD-------DECDLYR--------------II 199  Trypanosoma ...
Q4CU48         207 --DYHSFSIVLDNFRTYA---CDENF---------A-----PH-FT--AA-------KERVLYK--------------KV 243  Trypanosoma ...
XP_001564425   234 ssQQASLSFQIKGLKTCG---CNE------------------------PFepafvapGERMVRQ--------------II 272 
Q4Q363         234 stQQASLSVQIKEIKTCG---CNE------------------------RFepafvtpGERMARQ--------------LI 272  Leishmania m...
XP_002176965   353 FFNKISLYWDDEPpll--------------------------------------------------------------la 370 
8_pfamImport    85 SVDSLAVYCDEELsrpsrppghpaasssaavaatgsdaaevpprsgsalppsslspslpqpgndeehggevpptsgggsg 164 
29_pfamImport   71 QLERLALYHDSNSsp----------------------------------------------------------------w 86  
1_pfamImport    88 QLERLALYHDSNSfp----------------------------------------------------------------w 103 
XP_001421282   231 ALERVGVYADFNSpsv--------------------------------------------------------------as 248 
XP_003054806   242 TLSRLAIYFDVGAktl--------------------------------------------------------------rp 259 
Q4E184         200 LFQGLSFTVASLDcietsnrswr------------------------------------------------tdslhsfts 231  Trypanosoma ...
Q4CU48         244 VLEGVRVLLNA--------------------------------------------------------------------- 254  Trypanosoma ...
XP_001564425   273 SFHGLTASLR---------------------------------------------------------------------- 282 
Q4Q363         273 SLRGLAASLR---------------------------------------------------------------------- 282  Leishmania m...
XP_002176965   371 Et--dMLRGNLRKISpeqVQSRIS----SAMKALFrqpEPgkkirqsls-----------epvpldmdeSKPHQYICESL 433 
8_pfamImport   165 AagrdRSFLASGLTGe-dLESMFR----TSL--------Ag---------------------------gEDRHSYVVIPA 204 
29_pfamImport   87 Ei--eKQWDDISTEE---WVKMFE----DGIKEKTe-hNLks-------------------------kwALNRRYLLSPI 131 
1_pfamImport   104 Ei--eKQWDNITPEE---WVEIFE----DGIKEQTe-hKIks-------------------------kwALNRHYLLSPI 148 
XP_001421282   249 Et--pDGWRGIREDQ---FVRQMSavfnTEVGERMkegTSgd--------------------------vVIPQSYVFGPL 297 
XP_003054806   260 Lg--tAAWKDVASST---LAAVMEpgttSRAFEAAtagSNvptekaskaskasaseedvkasalaateqASRRSFLLAPA 334 
Q4E184         232 F-----------------LIKGME----KEVEK---------------------------------------FGYVLKPS 251  Trypanosoma ...
Q4CU48         255 Tt---FSMQRSGCSDdnyAAETIQdteeASLGVIRglsRKttpstlr----------------qslparCHR---IISPF 312  Trypanosoma ...
XP_001564425   283 ------------------TSSSRE----SKIP-------------------------------------------FLIPF 297 
Q4Q363         283 ------------------ISASSE----REVS-------------------------------------------LLKPF 297  Leishmania m...
XP_002176965   434 EVEMRG-------RTSDRSL----P-GPISCSFDVlpFE-FTFNVRPHQFLQYQRLKMAIKSQQRFDTMLRQ-RPTVSP- 498 
8_pfamImport   205 SPDFRLrv----qREGGGDGggvgGsSKYKIQAFF--NE-VGLVLNNSQIANINKMRSTLRDLERWEALYRH-RPKH-Ki 275 
29_pfamImport  132 NGSLKYhrlgnqeRNNQET-------PFERASVNI--ND-VNVTITEEQYHDWIKLVEVVSRYKTYIEISHL-RPVVPV- 199 
1_pfamImport   149 NGSLKYhrlgnqeRNNPDI-------PFERASVIL--ND-VNVTISEEQYHDWIKLVEVVSRYKTYIEISHL-RPMVPV- 216 
XP_001421282   298 RGTATYarr-ghaEDTNT--------PLHQLRMDI--NS-IQISIKSTQLKVFYNMYSNLRTSRVRYTYAHI-RPRVGV- 363 
XP_003054806   335 SARARYerrgkieAASETL-------ASQRVYLRV--DS-LAATLKSSHLRVLFYAVERLERDARRAPHAHL-RPSVSV- 402 
Q4E184         252 SGRAFGslq--------------fqpPKLQLGAFIlvHS-CGIDLDFKKIQGLLMMTSYVVSFWPCDKDEKKlRPIE--- 313  Trypanosoma ...
Q4CU48         313 SAMAFVqy---qpVPYRAD-----L-PTFRIELHV--DR-LRAVLSREEWAILLALWREARDGEEYDVLRHF-RPVG--- 376  Trypanosoma ...
XP_001564425   298 DMTLELayq-pvyTDAST--------PQYMAAARM--KDtCLFIITSETCTTCQSLVQCLVDVRQRQALRRL-RPIGvrp 365 
Q4Q363         298 DMAVELayq-pvyTDVST--------PQYMAAVRM--DDaCSCTVTSERCATCYGLVQYLVHVRQRQALRRL-RPIGerv 365  Leishmania m...
XP_002176965   499 LQNPK----A--WWKY---SIACVTSRpns--------------rpWEDVLRIIKSRPRYIELVIK 541 
8_pfamImport   276 KDGPK----A--WWVY---LVKCVSRPgkaek---------raklgWPDVARLLSLRKLYVHLYTA 323 
29_pfamImport  200 SEAPR----L--WWRF---AAQASLQQkrlc-----------yrfsWDRIHHLCQLRRRYIQLYTN 245 
1_pfamImport   217 SEAPR----L--WWRF---AAQASLQQkrlw-----------------krhsIYLLRRRYIQLYAN 256 
XP_001421282   364 KGNAR----L--WWRFagaGVQMHVDEirkrrgl-------dfkssvSAMVRITEARQRYIPLYVK 416 
XP_003054806   403 RESPR----A--WWTF---ATAAAKLRrsvdaae------rggelsVHRAMELMRARRAYVDAYAA 453 
Q4E184         314 KPSTVipgsCaaWWRY---SIDRIISNtrgcvk--------rtafhWATYQEWKCHSEEYYKHYLL 368  Trypanosoma cruzi
Q4CU48         377 AEKKRptdnAraWWAY---AIQVILHRirrvre--------rrvfvWEKYKRLKAAREEYMTLFKR 431  Trypanosoma cruzi
XP_001564425   366 TANPH----A--WWRY---ALDAVRQQlrknktaapasthkptpfsWRTYVSMKQKRDRYMRLYLR 422 
Q4Q363         366 KVNPR----A--WWRY---TLDAVRQQvqnnrtaalasarkltpfsWRAYTSMKQKRDRYMRLYLR 422  Leishmania major
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