4GOP,1JMC


Conserved Protein Domain Family
REPA_OB_2

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pfam16900: REPA_OB_2 (This model is not part of the current CDD release)
Replication protein A OB domain
Replication protein A contains two OB domains in it's DNA binding region. This is the second of the OB domains.
Statistics
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PSSM-Id: 522632
Aligned: 96 rows
Threshold Bit Score: 111.37
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4GOP_C       124 INELESVEANQQCDVIGILDSYGELSEIVS-KASQrPVQKRELTLVDQGNR---SVKLTLWGK----TAETFP-----T- 189  corn smut
XP_004239312 307 ICEIESAENNSIIDVIGIVTAVNPSVLILR-KNGT-ETQRRILNLKDQSGR---SVELTLWGDfcnrEGQNLQel-aeA- 379 
EES17568     196 ISEIENIEAGVIVDLIGIVTSVGPSAIVMR-KDGT-QAQKRTLQLKDMSVR---SMEIILWGKfcdaEGHQLQll-cdS- 268 
XP_003569087 401 ISEIANMDGGSMVDLLGVVTSVSPTVPLMK-KDGN-ETKKRNLQLKDMSGC---SVEITFWGDfcdaEGQQLQsl-cdS- 473 
EFJ30713     321 VSEIENLPNNAMVDAIGVVVGVNQTTTIMR-KNGT-ETQRRTLQLRDRSGK---SVEITMWGNfctqEGQHLQel-cdS- 393 
XP_003057576 350 IADVDHISSGSLVDVCAVVHHVGELNTIMK-RDGG-ETSKRSITLRDDSGA---SIELTLWAPqaldIGGRLEgl-vnD- 422 
XP_002949682 370 IADLETAEAGSMVDIIGLVETCDAWQSITR-RTGE-ETQKRSMVVRDESGR---SIEVTLWGPlvnnPGDQIEqm-vrS- 442 
XP_002141610 123 IKDIRNMNTPCTVDIIGIIKSSSPLSKVISrRNNE-EIPRRNIVIVDDSEY---QLNVTLWGD--------LAsiddeIl 190 
XP_002682345 286 LCDMTNVEDNMILDVAGVVQNIGETKEFTT-KNNR-KTKRCNISLIDDSSSpfcTVDLTIWGDmcdtHDMQ--------- 354 
A0CXL6       325 IEDVDNLSLDEKCDVLGVIIDIKPTTQIMT-KSNE-NRSKKNITLYDQTQR---GIDIVLWGQ----QAEKWQ-----F- 389  Paramecium tet...
4GOP_C       190 NAGvdekPVLAFKGVKVGDFGG-RSLSMFSSSTMLIN 225  corn smut
XP_004239312 380 GVS----PILAVKAAKVSDFIG-KSIVTISSTHLFIN 411 
EES17568     269 GSN----PILSLKSGRVCDFSG-RSVVTISSTQLKVN 300 
XP_003569087 474 GSS----PMLVLKSGRVNDFNG-KSVGTISSSLIKIN 505 
EFJ30713     394 GQS----PILAIKAGRVSDFSG-KSLGTISSTRFQIN 425 
XP_003057576 423 GDH----PVIAIKNGRVGDFQG-KNIGTINSSRVDIN 454 
XP_002949682 443 GAR----PVFAAKALRVGDFNG-KTLSTIGSSVLRID 474 
XP_002141610 191 SNN----PVVAFKNLQIRDFQG-KQGSTLNGRSMIDF 222 
XP_002682345 355 -QG----DVVILKSVRKSNYGG-VSLNTINSTRIFKD 385 
A0CXL6       390 QKD----EIVAFRGLKISDYQMvRNLTVTNSTIYE-K 421  Paramecium tetraurelia
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