4MMI,4FNV


Conserved Protein Domain Family
Hepar_II_III_N

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pfam16889: Hepar_II_III_N (This model is not part of the current CDD release)
Heparinase II/III N-terminus
This is the N-terminal domain of heparinase II/III proteins. It is a toroid-like domain.
Statistics
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PSSM-Id: 522625
Aligned: 19 rows
Threshold Bit Score: 401.727
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4MMI_A                  10 FDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYR-EKSKAR----------------EPDFSNAEkpadirQPIDKVTR 72  Pedob...
WP_022163224            28 FALLNLDYPGLEQVKEAYGRGNWKKAAQALLDYFR-QRAGVV----------------YPALDLNK------VTLSPTER 84  uncla...
EGJ72167                67 FAMLNLDRAGLEQVKLAVDAKDYDLAAERLLEYYR-QAKAFV----------------HPSFDINN------VTVSDQDQ 123
WP_276775984            28 FELLDLNRKGLEKVKKEYEKGKLESAAKHLLTYYR-TRTNFT----------------HPDLNLKE------ISVNATEQ 84  Bacte...
XP_002671026            74 FNALNFSIPQLSSVKQAVQDKDYSKAKSAFCTYLKfERNNVPwsfnprk--issagiaSSYITKAK---------ETLSG 142
PRJNA63271:OPIT5_22720  87 FAALDLDQPGLDPVRQAVRSGDLPAAQSAFATWLR-ERRITTwrfdprsa-svpdaalRFDRQAAA---------DAVRG 155
PRJNA63271:OPIT5_08655  46 FSALDLSLPALKSVSDTAARGDLSVAQLNFASYLR-QRTLLTsdvdpr----qpdrnrRFNREVAD---------AAAEG 111
PRJNA63271:OPIT5_12400  43 FAALDPAWPALAPVHAAVTEKNYETARRELAGYLR-TRTLRTwqivphrapypdaasvRYNAARAN---------AAAEG 112
CDA76084                49 FEKLNLDYPGLEKVKAYHEAGQDYYACYELLQYYR-NRSNVI----------------NPSIDLIN------TSYSAAEK 105
Q89YR9                  50 FEAINLNYPGLEKVKEFYEAGEHYYAANALLEYYR-TRTNVT----------------NPNLSLIN------VTISEAEQ 106 Bacte...
4MMI_A                  73 EMADKAL---VHQFQPHKGY--------------GYFD-------YGKD----INWQMWPVK-----------DNEVRWQ 113 Pedob...
WP_022163224            85 KWADEAL---EHTFFVHTGYq-------------PSFN-------YGKD----IDWKYWPVR-----------DNELRWQ 126 uncla...
EGJ72167               124 LWADNGM---QHIFQSVKGFd-------------PLYYdrlnedtGEKE----IDWTYWPKK-----------DNEIRWQ 172
WP_276775984            85 KWADDAL---KHVFFAHKGYq-------------PSYF-------YGDN----IDWTYWPVK-----------DNELRWQ 126 Bacte...
XP_002671026           143 KIT---VvsiPYTFADPEN----------------------------------INWNYNPTAqpgs---pdpyDAEWTWQ 182
PRJNA63271:OPIT5_22720 156 RIV---VveiAHDFPGND-----------------------------------IDWHHNPTRnapg----iayNPEWQWQ 193
PRJNA63271:OPIT5_08655 112 RVV-GGLvklWHTFPDNR-----------------------------------IDWLHDETRapervargvasNPEWQWQ 155
PRJNA63271:OPIT5_12400 113 RVV-GGLvalEANFPGNR-----------------------------------IDWLRNETRvraehgeavpfNPEWQWQ 156
CDA76084               106 AMADQAL---LHQFYVRGFSadlgadnkqgtsddTFYKfe----kKDENgqtvIDWDLQVEGv---------tSAEFKYQ 169
Q89YR9                 107 AKADYALv--DYRFHVNNFYedk--------etlKPYSv-----kQDGG----INWEYSPKDa----------SDEYQKQ 157 Bacte...
4MMI_A                 114 LHRVKWWQAMALV-YHATGDEKYARE------WVYQYSDWARKNP--------------------L-GLsqdndKFVWRP 165 Pedob...
WP_022163224           127 LHRHKWFIPMGKA-YRVTGDEKYARE------WVLQYVDWIRKNPlvkinpdlyeladvdsvkgeVeNV-----RFAWRP 194 uncla...
EGJ72167               173 LHRMYWWVPMGKV-YYTTKNEEYAKE------WVFQYQDWAKKNPmpteemv------nvgarpnKdNY-----DFTWRP 234
WP_276775984           127 LHRTKWWQPMGKV-YYTSKDEKYAKE------WVFQYMDWIKKNPledfinr-------qqvgadVeSLpn--sAFAWRA 190 Bacte...
XP_002671026           183 LNRMSFWTDLGRAlWYANGTSQMELAqnitnlFAAQLNSWVISQP--------------------RpTFanqagYSAWRT 242
PRJNA63271:OPIT5_22720 194 LCRMTFWHDLAAA-WRATGDERYARA------WVAQLRSFVSRCP--------------------VpGDaankhGSAWRT 246
PRJNA63271:OPIT5_08655 156 LCRMAFWADLGQA-YESTGDERYARA------WVAQLRSFAAQCP--------------------PpETrphrpGTAWRT 208
PRJNA63271:OPIT5_12400 157 LCRMAFWGDLASA-YRATGDERYARA------WVTQFRSFIEQCP--------------------ApDRqrngqGSAWRT 209
CDA76084               170 RHRWQWMEPQAKT-YRVTKNEDYIKN------WIETYQSWMNTYPcpn--------------akfDdNEtdknsNYQWKG 228
Q89YR9                 158 LHRHQWFIPQAKA-YRVSGDEKYIQS------WIEVYKNWIENNP----------------------KPttgpnTTSWWQ 208 Bacte...
4MMI_A                 166 LEVSDRVQSL-PPTFSLFVNSPAFTPAFLMEFLNSYHQQADYLSTH-YAE-QGNHRLFEAQRNLFAGVSFPEFKDSPRWR 242 Pedob...
WP_022163224           195 LETGIRLKDQ-IDQFLLFLPSRYFTPAFLTEFLVNYHKHAVHVQEN-YSA-EGNHLLFEAQYVLNAGIFFPEFAEASRWR 271 uncla...
EGJ72167               235 LEVSHRIEDQ-IIQFQLFLNAESFTAAFLTEFLINYANHANYILKN-YTP-EGNHLLFQAQRMMYAGICFPELKEADTWL 311
WP_276775984           191 LEVSHRLQDQ-IAQFMLFINSKHFTPAFLTQFLVNYESHAQHILSN-YSA-QGNHLLFEAQRVLYAGTSFPEFKEASKWR 267 Bacte...
XP_002671026           243 IEAGIRLSTSwAEIYHRFLTV--LPCDDLHTLVKSIYEQAIYLHT--YRTt-GNWLTMECNGLFTAGAVFPEFKLSSTWR 317
PRJNA63271:OPIT5_22720 247 IEAGIRM-NRwPEAFHSFLLSPDVTDEDLFLYAYSTLQHGRYLRA--HST-SANWLTIEMSGLYAAGTIFPEFKEAGEWR 322
PRJNA63271:OPIT5_08655 209 IECGIRTRWSwPAAWHSFLLSPAVTDDDLVFFAWLYLQHGRFLQK--FPSaNGNWLTMEMSGLHMCGVLFPEFREARAWR 286
PRJNA63271:OPIT5_12400 210 IECGIRMSGSwPAAFHSFLLSPSVSDEDLLLYLHASLEHARYLEK--FPT-SGNWLTMEMNGLYSIGVVFPEFAEAASWR 286
CDA76084               229 LQTAERLLSQ-LNVMQYYLQSTNFTPEWLSTFLISIADHVEMIRKNyYQTpGDNIRLSQIQAVFTAGVLMPEFKNATEWT 307
Q89YR9                 209 LQVSTRIGDQ-VQLLEYFKNSVNFTPEWLSTFLVEFAEQADFLVDYpYES-GGNILISQANALATAGTLMPEFKNAEKWM 286 Bacte...
4MMI_A                 243 QTGISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQTVENMIMALISISLPDY----- 317 Pedob...
WP_022163224           272 QSGIDVLNREIRKQVYADGGQYELDLGYHAAAIDIFSQALSMADANGFREDFPDSYVETIHQMMHFYLNTLFPDY----- 346 uncla...
EGJ72167               312 NSGITKLNEQIEEQVYADGMHYEMDLGYHLAAIDIFYQALRVATLNDKASVFPQSYKDIIRKMITVTYNTNYPND----- 386
WP_276775984           268 ASGIQILNDEIDKQVFADGGQYELDLGYHLAAINIFSKALRMAQVNGFADEFPASYSKIIHDMIVVTMNMYYPNY----- 342 Bacte...
XP_002671026           318 SIAISTMYNESVAQFLSDGAQYELSTGYHHVSIDNIIGLYLTAKTVGIVNEFPVDYVNRLQKALEFDISIMTPSL----- 392
PRJNA63271:OPIT5_22720 323 HYAAARLHEEITVQFLPDGAHYEYTPGYHNGALTSVLAIPNLAKATGRLGEIPPGYITALERAFDYNLRLMTPDR----- 397
PRJNA63271:OPIT5_08655 287 LFAINKIHENFNSQFLADGAQYELSPGYHEVATGNILAIPDLARRVGRADEIPAGYIAMIERALDFDLNLMTPDR----- 361
PRJNA63271:OPIT5_12400 287 RQAIDRLHAEVQTQFLPDGAHYELTPGYHQVALGNIVGLLRTGQTVGRRDEFPADYIAQTERAYDFNLRMMTPDR----- 361
CDA76084               308 NEASTMLDTEIGSQFLEDGVHADLDPSYHIGSVSNCLSLYYLLSLNDKTDLLPASFVSKLKNATNFLKDIIYPNY----- 382
Q89YR9                 287 NTGYQILSEEVQNQIMSDGWHKEMSLHYHIGIVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVMYFTYPNYfikgs 366 Bacte...
4MMI_A                 318 --NTPM-FGDSWITD--KNFRMA-QF-ASWARVFPANQAIKY 352 Pedobacter heparinus
WP_022163224           347 --TVPC-FSDGRRSA--PYSFVK-SF-KRWSAQFPDDEQLRY 381 unclassified Bacteroides
EGJ72167               387 --IAPL-FSDGRQGS--SAVMKR-NY-NGWLDLFPNDQELMY 421
WP_276775984           343 --TNPL-FSDAKMGS--ANSLIA-NY-QEFAKLFPEDENILY 377 Bacteroides coprosuis
XP_002671026           393 --YMPGpLNDGWDYQ-----VYN-YI-TTYASYFPDSALIKW 425
PRJNA63271:OPIT5_22720 398 --SLPR-FNDSWPVD-----VPR-VFrRQALTYFSSRPDYQW 430
PRJNA63271:OPIT5_08655 362 --SLPP-FNDSWPLD-----IRR-QL-RGALDFFPKRDDFRW 393
PRJNA63271:OPIT5_12400 362 --SLPE-LNDSWPVN-----VRS-SL-RGAREFFPQRDDFRW 393
CDA76084               383 --TIDN-YNDTRSDRlgKSIQIK-NF-KKYSEIYPDDEEMKY 419
Q89YR9                 367 dnVVPM-FNDSWSRT--RNVLKNtNF-KQYVEMFPDSEELKY 404 Bacteroides thetaiotaomicron VPI-5482
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