Conserved Protein Domain Family
TetR_C_11

?
pfam16859: TetR_C_11 (This model is not part of the current CDD release)
Tetracyclin repressor-like, C-terminal domain
This family of bacterial transcriptional repressors is characterised by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity.
Statistics
?
PSSM-Id: 522607
Aligned: 260 rows
Threshold Bit Score: 39.8591
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_012617550    94 VPDTGDLRNDVLILLHGiAQPLQI-IGAETMHGLMVEYLDKDMISSFPQR-MhpgTESRlTTAMMTILKNADTRGEVKLD 171 Methanosphaer...
Q2RPH7          87 PADTGDLRGDLEAWAEQlAEELASdAGRAIVRDLLAGGGE-----GTVCGrC---AAYT-RAQIEVMLTRASARGEAGP- 156 Rhodospirillu...
Q2JAP1          58 PVDTGSLRGDLAAYCEQyLEEMSSpAGRAFLRDLVASC-GDDRPACRCDL-Y---I----REQIGVIVERAARRGEPTPG 128 Frankia casua...
WP_012029322    77 PEDTGATASDLRLFIEQyAEEMSSpVGQALMRDVLWPA------GENFPAqC---CTFT-RANLETIASRAAARGERP-- 144 Bradyrhizobiu...
jgi:SACTE_4984  31 PADLGSLRADLDTWAEQfLDEMSSpPGHAYIRD---ALLGDPDGTNARQC-----SAYA-AEQIDAVLNRAVRRGEAVP- 100
BGI:SBI_09506   71 PADQGSLRADLEAWIEQfAEEMSSsVGRTYIRD---ALLGDPEQGNAAR--C---SDYA-AEQLTAIGVRAAGRGEAVPG 141
9_pfamImport     1 PEDRGGLRADLEAWAEQfLEELSSpPGRAYLRDA---LLGDDDGANATRC-----SDYA-ADQVTLILDRARARSERPP- 70 
31_pfamImport    1 PEDHGDLRADLRAWTEQfIEEMDSpPGRAYLRDA---LLADPEGANAGQC-----SQFA-ADQIATILDRATRRGECPP- 70 
SIPI:L083_5772  62 VPDTGTIEQDLTDWAQLiARDITRpQRIRYLRAMVAARID----LVAHCT-V---TEKR-GEQAAQMVGRARERGEKTP- 131
WP_014358871    88 LPDTGSLRGDLTDWAQIiAADIGRpKRRSYLRAMIVAR---DELVDECPC-----WEIR-RDQAQQMVARANDRGEPTP- 157 Gordonia poly...
WP_012617550   172 TISPRVISLPAVLlQYEILTTHEPIADTTIDEIVDDI 208 Methanosphaerula palustris
Q2RPH7         157 -SADRVLDRVVAPiYYRLIFTLPPISGEQAVALIAAc 192 Rhodospirillum rubrum ATCC 11170
Q2JAP1         129 --VGEIVEGVMAPmMYRILFVADPVDLADARRLVDAL 163 Frankia casuarinae
WP_012029322   145 FDVEEVIDHVVAPiVYHILFSDRTLTPDYCRQLLQRL 181 Bradyrhizobium sp. ORS 278
jgi:SACTE_4984 101 -DTERVIDRVVAPmVYGILFRPGRLDAEYARELVANA 136
BGI:SBI_09506  142 V--EALLDAIVAPlMYRILFRPSDTSAAYTHGLVAAA 176
9_pfamImport    71 -PLEAAMDHLVSPlVYRILFRPTDLDAAHARRLVAEL 106
31_pfamImport   71 -ALEPVLDQLVAPiMYRILLRPSAIDAEYARGLVSRV 106
SIPI:L083_5772 132 -TVPQILDHIIAPlYHHVVFAL-AVDDEYARRLVRDV 166
WP_014358871   158 -TVEQILDHIIAPlYHHAVFGK-AIDDAFAARLAGDv 192 Gordonia polyisoprenivorans
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap