Conserved Protein Domain Family
DIMCO_N

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pfam16844: DIMCO_N 
Dinitrogenase iron-molybdenum cofactor, N-terminal
DIMCO_N is the N-terminal domain of the gamma (Y) subunit of nitrogenase. An alternative name is NafY_N, for nitrogenase accessory factor Y N-terminal. This region is negatively charged and appears to be necessary for recognising and interacting with the apo state of dinitrogenase. The full-length NafY protein facilitates the transfer of iron-molybdenum cofactor, or FeMo-co, into apodinitrogenase by binding to both. The C-terminal region, family Nitro_FeMo-Co, pfam02579, is the part that binds to the cofactor, and the N-terminus binds to apodinitrogenase. Nitrogenase is the bacterial enzyme responsible for nitrogen fixation by catalysing the reduction of nitrogen gas (N2) to ammonium in an ATP-dependent manner. It has two components, dinitrogenase and dinitrogenase reductase.
Statistics
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PSSM-Id: 496150
Aligned: 19 rows
Threshold Bit Score: 69.6278
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015145082     6 LSNEVALRIALAARALPGTSVGDLIGALHTYLGDAIDETALSKITVTNLKtafgqtyQLDADEDGEDagtadMAALKEAV 85  Pleurocapsa s...
jgi:Hhal_0270   19 LQPELALRIGLAARELPELDVSQLVRVLTALLGAPLTAEKLAGVTPRGLR-------DAGGAHHLEAvqqapAARLEAAC 91 
WP_011764278    11 VTREAALRIAMAARALPGVEVVAFVRALGDRLGLPVTDEKLARVTVEDLKal----lQGD---EIVDpg-veSSALKAAV 82  Azoarcus olea...
WP_013029022     6 ITKTAALRIAQAARALADVNAGAFAAKLGDSLGLPITEEKLAKVTVADLKli----lSGE---ETVEpd-vdSASIKLAV 77  Sideroxydans ...
WP_025281995     6 LDRECALRIALAKKVLPGIELPRLLEIIIERIGAPIKEEALASMTAEDLRqglkrtrHPDIEQDECN-----SQSLEMAV 80  Ectothiorhodo...
jgi:Thimo_3240  17 ISDDIALRVALAARALPETPPARLLKVLADAVGLPLSEQRLNGLTVRQLKt------AADGELGEVD-----VPLLKGAL 85 
WP_012971073     6 LTEDMALRIGLAARTLPDTDPARLLRVLAELVGLPPSAERLATVRVKDLKq------AGDGEFAHLD-----QSELRAAL 74  Allochromatiu...
WP_014779901     6 LSDDIALRIALAARTLPDTDPARLIRVLKDAVGLPPTAESLAGLKVKDLKq------AADGEFADLD-----QAVLKAAL 74  Thiocystis vi...
WP_015816974     6 LDKEVALRIGLAVKELDAISTQEFLGLLIKIMGEPITPAKLDKLRAKKVKlla--geSLDTVS---------SETFERAF 74  Teredinibacte...
1_pfamImport     1 -PAHLALRIALAARELNGVDTGQLLRTLLSVTGEPITEARLARLRLNRLRnrl--lsSVDGPPPVLS-----ERQLQRAL 72 
WP_015145082    86 RILWGETNDEDKLPP 100 Pleurocapsa sp. PCC 7327
jgi:Hhal_0270   92 RALHGEEAATDPVPE 106
WP_011764278    83 RFLWGEGLDDGQPTP 97  Azoarcus olearius
WP_013029022    78 RHLWGEAGDADNLPP 92  Sideroxydans lithotrophicus
WP_025281995    81 RYLSGEREVEPDLPA 95  Ectothiorhodospira
jgi:Thimo_3240  86 AFLKGEAVGDSTPPP 100
WP_012971073    75 AILQGEGVEQPDPPP 89  Allochromatium vinosum
WP_014779901    75 AILKGDSGLDLTPPP 89  Thiocystis violascens
WP_015816974    75 ALLKGRGIRQFLNPK 89  Teredinibacter turnerae
1_pfamImport    73 GLLKGRGVRMPEEP- 86 
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