Conserved Protein Domain Family
RRM_occluded

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pfam16842: RRM_occluded (This model is not part of the current CDD release)
Occluded RNA-recognition motif
This family is an unusual, usually C-terminal, RNA-recognition motif found in fungi. In yeast it is the fourth RRM domain on the essential splicing factor Prp24. Structurally, it has a non-canonical RRM fold with the expected beta-aloha-beta-beta-alpha-beta RRM-fold is flanked by N- and C-terminal alpha-helices. These two additional flanking alpha-helices occlude the beta-sheet face. The electropositive surface thereby presented is an alternative RNA-binding surface that allows both binding and unwinding of the U6 small nuclear RNA's internal stem loop, at least in vitro.
Statistics
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PSSM-Id: 522599
Aligned: 42 rows
Threshold Bit Score: 91.4288
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003675410 307 EKIISLYP-MSDRVSKFELRSFIEEKchmydniEHIKDIHLVPDHNGALLVLSNNNIAAKYSMILNGLSFHNKSISCGSV 385
XP_003955800 297 SAIISLFP-LTDKISRDQIRALLLEKagi--sdEDIMHIYCVSDYVCSLVILKNTKLQAKCIMAMDGINFQNKTLRCGTV 373
XP_003686983 322 DMFISIFP-LADKITKSQISKLINEKtni--peHSIMKIYLVADYNGCIVKFNNSRYSAKCIMALDNSTYNNKNIRCSNI 398
XP_001643044 302 DLMISLYP-LSDKTSKSQVSELLTTNlni--qeADINKILLVSDYQSAIVIMKNRQIAAKCLMALDGIQFQKKKLHCTTI 378
XP_004178672 305 SRTVSLHPiISDKISKEKITAFVLKIipt-vsqDDLDKVYLVTDYSGCLIVCKSETIAAKLMMGLNGQRFQNNVIHCGTI 383
XP_003672485 311 ARIISLYP-LSDRVTKSNIKSFLHETfpnrsvgDEMEDIYLVSDKNGAFIILKDEKLAGIYLMGLNMKMFHNKVIHCGTV 389
XP_003679415 292 DRIISLFP-LKDNTSKTQIEEILLEKtnl--thDELEEILLVPDKEGALIILRDSKQAARCSMSLNGCEFQKTVLRCGAV 368
XP_003645224 303 DNVISLFP-FSDKVSKSQIQRIIKDHasf-lqnEMIKDIFLVTDHEGALILLNDEKIAAKLILALNGCKYASRTLKCGTI 380
Q756X0       302 pNILGLFP-ISDTLSKECIRSLVKEKapf-ledNMLEDILLVSDHEGALLIFCDEKTAAKVALALHMSTYGKVILNCSDV 379 Eremothecium go...
XP_002552411 320 GSVLGIYP-LSDKIPTPQIRCFIVEQakv--kkEDIKKIYLVPDHEGALVVARSGPIAAKISLSIHGSLFNKRTIMCCSP 396
XP_003675410 386 QDLKNH 391
XP_003955800 374 FDLKNS 379
XP_003686983 399 NGLKKS 404
XP_001643044 379 DGMKRS 384
XP_004178672 384 HDLKNS 389
XP_003672485 390 NDLKGN 395
XP_003679415 369 YDLRKQ 374
XP_003645224 381 KELSRH 386
Q756X0       380 RSLKQH 385 Eremothecium gossypii
XP_002552411 397 KELQRQ 402
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