6XZ6


Conserved Protein Domain Family
GARP

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pfam16731: GARP (This model is not part of the current CDD release)
Glutamic acid/alanine-rich protein of Trypanosoma
GARP, or glutamic acid/alanine-rich protein, is one of a subset of major surface molecules on Trypanosoma species. They are all surface-orientated, immunodominant, and highly charged. GARP is interesting as ts expression coincides with the loss and gain of variant surface glycoprotein (VSG) molecules in the tsetse vector. It has an extended helical bundle structure that is homologous to the core surface structure of VSG, suggesting that it might replace the bloodstream VSG as the trypanosomes differentiate inside the tsetse vector after a blood-meal.
Statistics
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PSSM-Id: 522530
Aligned: 16 rows
Threshold Bit Score: 117.092
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6XZ6_A  10 LEQTKALCEVAKQLRKLPLLTEERRFEAVGALEESKKAAKEGKKAAKRAEaGAVGGtseqqqaAKRAREAATVAYEASVR 89  Trypanosoma brucei br...
Q38CV1  38 LKHIEVLCNLAEQLRGLPDTVSSAVISVTEASIKASKAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEA 109 Trypanosoma brucei
Q38CW0  38 VEEIRASCEVAHQLRGLSQTVTSAVETSAAASSKAFEAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEA 109 Trypanosoma brucei
Q38CV6  38 AGHVRVVCNLAEQLRGLPDTVSSALVNAAAASSKAFEAKVQAEEAVELAE-SRGLN-------VTKAKEAAVRATLAAEA 109 Trypanosoma brucei
Q38CU9  38 aVYVTALCRVAEQLRGLGGTISSSLLTVTSASSKAFKAKVQAEKAVKLAE-SRGLN-------VTKAKEAAVRATLAAEA 109 Trypanosoma brucei
Q38CV5  38 AEDVLVLCHVAEQLRGLPDTVSSALVTAAAASSKAFEAKVQAEEAVELAE-SRGLN-------VTKAKEAAVRATLAAEA 109 Trypanosoma brucei
Q38CV4  38 ADDVLVLCYLAEQLRGLPDTISSALVNAAAASSKAFEAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEA 109 Trypanosoma brucei
Q57Z47  32 lEQTKALCEVAKQLRKLPLLTEERRFEAVGALEESKKAAKEGKKAAKRAEaGAVGGtseqqqaAKRAREAATVAYEASVR 111 Trypanosoma brucei
Q385U1  28 lAQVLTLCQITEQLRGLKEVVMKIGPRAVEEALFTLKAKKRSEVSLRRAE-EAAERdrnagfaAERARLAYDSVCEAVEF 106 Trypanosoma brucei
Q57U16  29 VSHVSAACLFSEALHGIPFGVKALKALAAANVSDASKAREGCQDAVRRAE-DASWNnpkaeeaVGRARAALKEAESAENA 107 Trypanosoma brucei
6XZ6_A  90 AEAAAMEVKRFARALDSFESEYESVfSGLLRGAAEHGG-NETIKQLAKECaTAVADDVTPEALTRAAHNLRGL--YMQDF 166 Trypanosoma brucei br...
Q38CV1 110 AATAASNVEINAANIAELPWSQRRR-DAGLQNIEHCKNlDKDVREAAVKC-TKKAENVTADSLRAALEGLETLf-SDVYI 186 Trypanosoma brucei
Q38CW0 110 AATAASNVEINAANIAAVPWLERRQ-NTGWEVLTKCINlDDDIKKMASKC-KSAAEVVTAESISAALNDLGKTf-INEKT 186 Trypanosoma brucei
Q38CV6 110 AATAASNVEINAANVTSSRLARRNP-NTGFEKIAMCENlDEDVREAAVKC-TKKAENVTTQSLNEALHRLENLy-TNMSA 186 Trypanosoma brucei
Q38CU9 110 AATAVSYCITHSTKVGSIAEMLWEV-DEELHVFSLCGNkDRDVQDTALKC-TDTAEGVTAQSLSEALEGLAKLv-FDDNV 186 Trypanosoma brucei
Q38CV5 110 AATAVSYANAHGTKVGSMTEILWEA-DEELRELVVCKRmDEETIKAAAEC-TGTAEVVTAQSLSEALEALANLhyGDENV 187 Trypanosoma brucei
Q38CV4 110 AATAASNVEINAANISAFSIDFLESaNLLLFEVRDAKDvGEDVRIVAQRC-TGEANFVTVASLTNALDNVTSLysVYGKG 188 Trypanosoma brucei
Q57Z47 112 AEAAAMEVKRFARALDSFESEYESVfSGLLRGAAEHGG-NETIKQLAKECaTAVADDVTPEALTRAAHNLRGL--YMQDF 188 Trypanosoma brucei
Q385U1 107 AEYAATSIEGRASSLLVIQEYYVPFlEDVMLRVGTDAEaAE-AQEAAMSC-LQTKRSVSPTSLSEAALELRVR--LGVRN 182 Trypanosoma brucei
Q57U16 108 AKTALSDVEQYAARAPLLAAGKTAPiDDYLKSVAEDNSaASTARRIARGC-SLPNRGVNSWVLTQAVESACAI--FMGEI 184 Trypanosoma brucei
6XZ6_A 167 AEEYLQEANEAANKLEELQKATAETVRAADAADDAKS 203 Trypanosoma brucei brucei TREU927
Q38CV1 187 LVTLRKEKVEMQEEMQSLEQNAATVLRVLQKAEDAAA 223 Trypanosoma brucei
Q38CW0 187 REALRKESVEFHKELASLEEHVEEAVRAQKRAEDAAA 223 Trypanosoma brucei
Q38CV6 187 LESLRVEHVEIERFFEMLEEHVEEAVSAQRQAEDAAA 223 Trypanosoma brucei
Q38CU9 187 ARKLRQEDTVFQREFMWLQQHMEEAVRAQKQAEDAAA 223 Trypanosoma brucei
Q38CV5 188 AETLRRKDVVFHKELKSLEGYVEEAVHAQKQAEDAAA 224 Trypanosoma brucei
Q38CV4 189 TASLSMESVALLEELKMLEDGLKKSQVAVSVAADAAD 225 Trypanosoma brucei
Q57Z47 189 AEEYLQEANEAANKLEELQKATAETVRAADAADDAKS 225 Trypanosoma brucei
Q385U1 183 FRALRRDLHRAAFCLYSLKKTAAKIALARSSVEEiey 219 Trypanosoma brucei
Q57U16 185 CRIARTRMVDLRAEYDQLEAAVRRAGEARVAARAAES 221 Trypanosoma brucei
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